Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 5' | -56.8 | NC_006151.1 | + | 134081 | 0.67 | 0.796183 |
Target: 5'- uGCGA-GCGAGCCcgugaccguggacGGAGGGCGGcUGCu- -3' miRNA: 3'- -UGCUgUGCUCGG-------------CCUUCUGCC-ACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 103311 | 0.67 | 0.79163 |
Target: 5'- cGCGGCGCGAcgccgagcugcgcacGCUGGugcAGGCGGcGCAGc -3' miRNA: 3'- -UGCUGUGCU---------------CGGCCu--UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 121410 | 0.67 | 0.787962 |
Target: 5'- uGCGGCGCGGGCgGGGAcgucGCGGgGCu- -3' miRNA: 3'- -UGCUGUGCUCGgCCUUc---UGCCaCGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 33126 | 0.67 | 0.778693 |
Target: 5'- cGCGugcCGCGGGCCGaGugucGGGCGaGUGCGAg -3' miRNA: 3'- -UGCu--GUGCUCGGC-Cu---UCUGC-CACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 76326 | 0.67 | 0.778693 |
Target: 5'- --uGCACGGGCUGGucGGCcgGGUGCGg -3' miRNA: 3'- ugcUGUGCUCGGCCuuCUG--CCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 42682 | 0.68 | 0.769291 |
Target: 5'- uGCG-UGCGAGCCGGA-GACGGaGaCAAu -3' miRNA: 3'- -UGCuGUGCUCGGCCUuCUGCCaC-GUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 96927 | 0.68 | 0.769291 |
Target: 5'- cCGGgACGGGCCGGGAucGCGG-GCGGg -3' miRNA: 3'- uGCUgUGCUCGGCCUUc-UGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 119699 | 0.68 | 0.769291 |
Target: 5'- aACGACAgCGAGCCcccGAAGGCGaucaUGCAGg -3' miRNA: 3'- -UGCUGU-GCUCGGc--CUUCUGCc---ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 27307 | 0.68 | 0.759765 |
Target: 5'- gGCGugGggguCGAGgCGGggGACGGgggGCu- -3' miRNA: 3'- -UGCugU----GCUCgGCCuuCUGCCa--CGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 96587 | 0.68 | 0.750125 |
Target: 5'- cGCGGCGCGAggcGCCGGgcG-CGG-GCGc -3' miRNA: 3'- -UGCUGUGCU---CGGCCuuCuGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 127484 | 0.68 | 0.749155 |
Target: 5'- aACGAgcCGCGGaccccgcGCCGGAAGcUGGUGCGc -3' miRNA: 3'- -UGCU--GUGCU-------CGGCCUUCuGCCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 135093 | 0.68 | 0.740381 |
Target: 5'- gGCGGCG-GGGCCGGGcGGGCGGcgGUAGc -3' miRNA: 3'- -UGCUGUgCUCGGCCU-UCUGCCa-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 59042 | 0.68 | 0.73054 |
Target: 5'- -gGuACAUGAGCCGGcuccAGGCGG-GCAGg -3' miRNA: 3'- ugC-UGUGCUCGGCCu---UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 68055 | 0.68 | 0.73054 |
Target: 5'- -gGGCACGGGCuCGGc-GACGG-GCAGg -3' miRNA: 3'- ugCUGUGCUCG-GCCuuCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 20090 | 0.68 | 0.73054 |
Target: 5'- aACGuCAucuUGGGCUGGggGACGG-GCGc -3' miRNA: 3'- -UGCuGU---GCUCGGCCuuCUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 30397 | 0.68 | 0.727571 |
Target: 5'- cGCGACGCGAGUCgacggGGAgaggaaggaggggaGGACGGaggGCGAg -3' miRNA: 3'- -UGCUGUGCUCGG-----CCU--------------UCUGCCa--CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 84754 | 0.69 | 0.690412 |
Target: 5'- gACGGCGCGcgccGCCGaGGAGGCGGacGCGg -3' miRNA: 3'- -UGCUGUGCu---CGGC-CUUCUGCCa-CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 14267 | 0.69 | 0.690412 |
Target: 5'- uCGGgGUGGGCCGGGAGugGGcgugGCAAc -3' miRNA: 3'- uGCUgUGCUCGGCCUUCugCCa---CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 91744 | 0.69 | 0.680234 |
Target: 5'- cGCGGCgggcgaGCGGGCuCGGGcGGGCGGUGUg- -3' miRNA: 3'- -UGCUG------UGCUCG-GCCU-UCUGCCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 73775 | 0.69 | 0.680234 |
Target: 5'- -gGGCACGuGCUGGgcGGCGGcGCGc -3' miRNA: 3'- ugCUGUGCuCGGCCuuCUGCCaCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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