Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 5' | -56.8 | NC_006151.1 | + | 106191 | 0.66 | 0.856296 |
Target: 5'- cGCcGCugGAGCCGG----CGGUGCGg -3' miRNA: 3'- -UGcUGugCUCGGCCuucuGCCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 113026 | 0.66 | 0.856296 |
Target: 5'- gACGACGCGugcGCCGGGugcugcGCGGcgGCGGa -3' miRNA: 3'- -UGCUGUGCu--CGGCCUuc----UGCCa-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 121906 | 0.66 | 0.856296 |
Target: 5'- cGCGuacGCGCGGGCCgaGGggGAcCGcGUGCu- -3' miRNA: 3'- -UGC---UGUGCUCGG--CCuuCU-GC-CACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 81749 | 0.66 | 0.856296 |
Target: 5'- gGCGGCGCgGAGCUGGuccGCGG-GCGc -3' miRNA: 3'- -UGCUGUG-CUCGGCCuucUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 133738 | 0.66 | 0.848396 |
Target: 5'- gGCGA-GCGAGUgGGGucGGGCGcGUGCGGa -3' miRNA: 3'- -UGCUgUGCUCGgCCU--UCUGC-CACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 75406 | 0.66 | 0.848396 |
Target: 5'- uGCGuGCGCGGGuCCGGGAGGCccggcgugGGcGCGAa -3' miRNA: 3'- -UGC-UGUGCUC-GGCCUUCUG--------CCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 100920 | 0.66 | 0.84356 |
Target: 5'- gACGACGCGAGCgCGGGcgugccccugcucgcGcaaacGugGGUGCc- -3' miRNA: 3'- -UGCUGUGCUCG-GCCU---------------U-----CugCCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 102509 | 0.66 | 0.84356 |
Target: 5'- cGCGGCGCGGGaccCCGGcggcgucuacgaccAGACGGUGguGg -3' miRNA: 3'- -UGCUGUGCUC---GGCCu-------------UCUGCCACguU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 53482 | 0.66 | 0.840297 |
Target: 5'- cCGGCAgCGAGCCGuggcacgcGAAGGCcaGGUGCu- -3' miRNA: 3'- uGCUGU-GCUCGGC--------CUUCUG--CCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 78578 | 0.66 | 0.840297 |
Target: 5'- cGCGGCgACGGGCCuGGAGcuGGCGGU-CAu -3' miRNA: 3'- -UGCUG-UGCUCGG-CCUU--CUGCCAcGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 63406 | 0.66 | 0.832007 |
Target: 5'- aGCaGCACGGGCaCGGcgcAGGCGGgcgGCAc -3' miRNA: 3'- -UGcUGUGCUCG-GCCu--UCUGCCa--CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 23889 | 0.67 | 0.823534 |
Target: 5'- aGCGGguuCACGGGCUGGgcGuCGGUcGCGGg -3' miRNA: 3'- -UGCU---GUGCUCGGCCuuCuGCCA-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 55378 | 0.67 | 0.823534 |
Target: 5'- cGCGAgCGCGAGCaGGAGGuGCGGcgccUGCGc -3' miRNA: 3'- -UGCU-GUGCUCGgCCUUC-UGCC----ACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 76018 | 0.67 | 0.823534 |
Target: 5'- cCGACACGAGCgCGGcgcAGGccacGCGGUccGCGAg -3' miRNA: 3'- uGCUGUGCUCG-GCC---UUC----UGCCA--CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 29070 | 0.67 | 0.814884 |
Target: 5'- gGCGcCGCGGGCCccGAGACGGccgcgGCGAc -3' miRNA: 3'- -UGCuGUGCUCGGccUUCUGCCa----CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 88965 | 0.67 | 0.806066 |
Target: 5'- cCGGCGC--GCgGGAAGACGGcGCAc -3' miRNA: 3'- uGCUGUGcuCGgCCUUCUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 139742 | 0.67 | 0.806066 |
Target: 5'- gGCGACAgGAGgCGGAucguccGGACGGcggGCc- -3' miRNA: 3'- -UGCUGUgCUCgGCCU------UCUGCCa--CGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 102974 | 0.67 | 0.806066 |
Target: 5'- gACGGCGCGcuGCUGGcgcagcugcugGAGGCGG-GCGAg -3' miRNA: 3'- -UGCUGUGCu-CGGCC-----------UUCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 4319 | 0.67 | 0.80339 |
Target: 5'- -gGGCACGcGGCCGGGcugcgcggcggcgaAGGCGGcGCGGa -3' miRNA: 3'- ugCUGUGC-UCGGCCU--------------UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 89488 | 0.67 | 0.797089 |
Target: 5'- cGCGGCgGCGAGCCGGuacgcGCGGgugugGCGc -3' miRNA: 3'- -UGCUG-UGCUCGGCCuuc--UGCCa----CGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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