miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 5' -56.8 NC_006151.1 + 46634 0.73 0.488339
Target:  5'- uGCGACGCG-GCCGGAcGGGCGGacagGCc- -3'
miRNA:   3'- -UGCUGUGCuCGGCCU-UCUGCCa---CGuu -5'
29648 5' -56.8 NC_006151.1 + 53482 0.66 0.840297
Target:  5'- cCGGCAgCGAGCCGuggcacgcGAAGGCcaGGUGCu- -3'
miRNA:   3'- uGCUGU-GCUCGGC--------CUUCUG--CCACGuu -5'
29648 5' -56.8 NC_006151.1 + 55138 0.66 0.856296
Target:  5'- gGCGACAUca--CGG-AGACGGUGCGc -3'
miRNA:   3'- -UGCUGUGcucgGCCuUCUGCCACGUu -5'
29648 5' -56.8 NC_006151.1 + 55378 0.67 0.823534
Target:  5'- cGCGAgCGCGAGCaGGAGGuGCGGcgccUGCGc -3'
miRNA:   3'- -UGCU-GUGCUCGgCCUUC-UGCC----ACGUu -5'
29648 5' -56.8 NC_006151.1 + 56569 0.66 0.871475
Target:  5'- gGCGACGCGccGCCGcccGAcGGGCuGGUGCGGa -3'
miRNA:   3'- -UGCUGUGCu-CGGC---CU-UCUG-CCACGUU- -5'
29648 5' -56.8 NC_006151.1 + 59042 0.68 0.73054
Target:  5'- -gGuACAUGAGCCGGcuccAGGCGG-GCAGg -3'
miRNA:   3'- ugC-UGUGCUCGGCCu---UCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 61782 0.66 0.863991
Target:  5'- uGCGGCGCGAgGCCGGccGGCuG-GCGu -3'
miRNA:   3'- -UGCUGUGCU-CGGCCuuCUGcCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 63406 0.66 0.832007
Target:  5'- aGCaGCACGGGCaCGGcgcAGGCGGgcgGCAc -3'
miRNA:   3'- -UGcUGUGCUCG-GCCu--UCUGCCa--CGUu -5'
29648 5' -56.8 NC_006151.1 + 64481 0.66 0.863991
Target:  5'- cGCGGCggggacgcccGCGGGCgCGGgcGGCGG-GCGc -3'
miRNA:   3'- -UGCUG----------UGCUCG-GCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 65170 0.69 0.670017
Target:  5'- uGCGGCgcGCGAGgCGGAAGcGCGGguccGCGAg -3'
miRNA:   3'- -UGCUG--UGCUCgGCCUUC-UGCCa---CGUU- -5'
29648 5' -56.8 NC_006151.1 + 68055 0.68 0.73054
Target:  5'- -gGGCACGGGCuCGGc-GACGG-GCAGg -3'
miRNA:   3'- ugCUGUGCUCG-GCCuuCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 72495 0.66 0.870737
Target:  5'- gGCGGCGCGAGCgaaaGAAGACacugacgcgggcgGGUGCc- -3'
miRNA:   3'- -UGCUGUGCUCGgc--CUUCUG-------------CCACGuu -5'
29648 5' -56.8 NC_006151.1 + 73775 0.69 0.680234
Target:  5'- -gGGCACGuGCUGGgcGGCGGcGCGc -3'
miRNA:   3'- ugCUGUGCuCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 75406 0.66 0.848396
Target:  5'- uGCGuGCGCGGGuCCGGGAGGCccggcgugGGcGCGAa -3'
miRNA:   3'- -UGC-UGUGCUC-GGCCUUCUG--------CCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 76018 0.67 0.823534
Target:  5'- cCGACACGAGCgCGGcgcAGGccacGCGGUccGCGAg -3'
miRNA:   3'- uGCUGUGCUCG-GCC---UUC----UGCCA--CGUU- -5'
29648 5' -56.8 NC_006151.1 + 76326 0.67 0.778693
Target:  5'- --uGCACGGGCUGGucGGCcgGGUGCGg -3'
miRNA:   3'- ugcUGUGCUCGGCCuuCUG--CCACGUu -5'
29648 5' -56.8 NC_006151.1 + 78578 0.66 0.840297
Target:  5'- cGCGGCgACGGGCCuGGAGcuGGCGGU-CAu -3'
miRNA:   3'- -UGCUG-UGCUCGG-CCUU--CUGCCAcGUu -5'
29648 5' -56.8 NC_006151.1 + 78612 0.73 0.459981
Target:  5'- aGCGACGCGGagacgaacgcGCCGGAcgccGACGcGUGCGAg -3'
miRNA:   3'- -UGCUGUGCU----------CGGCCUu---CUGC-CACGUU- -5'
29648 5' -56.8 NC_006151.1 + 81749 0.66 0.856296
Target:  5'- gGCGGCGCgGAGCUGGuccGCGG-GCGc -3'
miRNA:   3'- -UGCUGUG-CUCGGCCuucUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 82757 0.72 0.517491
Target:  5'- gACGACGCGGGCaUGGu-GACGGgcacgGCAAa -3'
miRNA:   3'- -UGCUGUGCUCG-GCCuuCUGCCa----CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.