miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 5' -56.8 NC_006151.1 + 4235 0.66 0.871475
Target:  5'- -gGGCGCGggcAGCCGGA--GCGG-GCAGg -3'
miRNA:   3'- ugCUGUGC---UCGGCCUucUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 4319 0.67 0.80339
Target:  5'- -gGGCACGcGGCCGGGcugcgcggcggcgaAGGCGGcGCGGa -3'
miRNA:   3'- ugCUGUGC-UCGGCCU--------------UCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 5092 0.71 0.557378
Target:  5'- cGCGGCGgGcGCCGGcgGAGACGGUgGCGg -3'
miRNA:   3'- -UGCUGUgCuCGGCC--UUCUGCCA-CGUu -5'
29648 5' -56.8 NC_006151.1 + 5251 0.77 0.296813
Target:  5'- gGCGGCGgGGGcCCGGggGGCGGaggGCGAg -3'
miRNA:   3'- -UGCUGUgCUC-GGCCuuCUGCCa--CGUU- -5'
29648 5' -56.8 NC_006151.1 + 9695 0.69 0.670017
Target:  5'- cCGGcCGCGGGugcCCGGGAGACGGgaGCGAa -3'
miRNA:   3'- uGCU-GUGCUC---GGCCUUCUGCCa-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 10061 0.66 0.863991
Target:  5'- aGCGGCuccCGAGuCCGGGaaggaaAGGCGG-GCGGa -3'
miRNA:   3'- -UGCUGu--GCUC-GGCCU------UCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 10200 0.72 0.527365
Target:  5'- cGCGGCGCGGGCggCGGcugcaGAGGCGGcUGCGGa -3'
miRNA:   3'- -UGCUGUGCUCG--GCC-----UUCUGCC-ACGUU- -5'
29648 5' -56.8 NC_006151.1 + 14267 0.69 0.690412
Target:  5'- uCGGgGUGGGCCGGGAGugGGcgugGCAAc -3'
miRNA:   3'- uGCUgUGCUCGGCCUUCugCCa---CGUU- -5'
29648 5' -56.8 NC_006151.1 + 20090 0.68 0.73054
Target:  5'- aACGuCAucuUGGGCUGGggGACGG-GCGc -3'
miRNA:   3'- -UGCuGU---GCUCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 20122 0.75 0.388965
Target:  5'- gGCGACG-GGGCUGGggGGCGG-GCGc -3'
miRNA:   3'- -UGCUGUgCUCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 21386 0.73 0.44157
Target:  5'- -gGGCACGAcgGCCGGcggggcgaaGGGGCGGUGCGg -3'
miRNA:   3'- ugCUGUGCU--CGGCC---------UUCUGCCACGUu -5'
29648 5' -56.8 NC_006151.1 + 23889 0.67 0.823534
Target:  5'- aGCGGguuCACGGGCUGGgcGuCGGUcGCGGg -3'
miRNA:   3'- -UGCU---GUGCUCGGCCuuCuGCCA-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 27307 0.68 0.759765
Target:  5'- gGCGugGggguCGAGgCGGggGACGGgggGCu- -3'
miRNA:   3'- -UGCugU----GCUCgGCCuuCUGCCa--CGuu -5'
29648 5' -56.8 NC_006151.1 + 27488 0.66 0.863991
Target:  5'- uCGGCgggguggugggaACGGGgUGGGAGGgGGUGCGAu -3'
miRNA:   3'- uGCUG------------UGCUCgGCCUUCUgCCACGUU- -5'
29648 5' -56.8 NC_006151.1 + 29070 0.67 0.814884
Target:  5'- gGCGcCGCGGGCCccGAGACGGccgcgGCGAc -3'
miRNA:   3'- -UGCuGUGCUCGGccUUCUGCCa----CGUU- -5'
29648 5' -56.8 NC_006151.1 + 30397 0.68 0.727571
Target:  5'- cGCGACGCGAGUCgacggGGAgaggaaggaggggaGGACGGaggGCGAg -3'
miRNA:   3'- -UGCUGUGCUCGG-----CCU--------------UCUGCCa--CGUU- -5'
29648 5' -56.8 NC_006151.1 + 31388 0.7 0.639212
Target:  5'- cCGGCACcaAGCCGGggGGcCGGgGCGAg -3'
miRNA:   3'- uGCUGUGc-UCGGCCuuCU-GCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 33126 0.67 0.778693
Target:  5'- cGCGugcCGCGGGCCGaGugucGGGCGaGUGCGAg -3'
miRNA:   3'- -UGCu--GUGCUCGGC-Cu---UCUGC-CACGUU- -5'
29648 5' -56.8 NC_006151.1 + 34293 1.05 0.003678
Target:  5'- gACGACACGAGCCGGAAGACGGUGCAAc -3'
miRNA:   3'- -UGCUGUGCUCGGCCUUCUGCCACGUU- -5'
29648 5' -56.8 NC_006151.1 + 42682 0.68 0.769291
Target:  5'- uGCG-UGCGAGCCGGA-GACGGaGaCAAu -3'
miRNA:   3'- -UGCuGUGCUCGGCCUuCUGCCaC-GUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.