miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 5' -56.8 NC_006151.1 + 34293 1.05 0.003678
Target:  5'- gACGACACGAGCCGGAAGACGGUGCAAc -3'
miRNA:   3'- -UGCUGUGCUCGGCCUUCUGCCACGUU- -5'
29648 5' -56.8 NC_006151.1 + 99194 0.8 0.173284
Target:  5'- gACGcCACGGGCgugUGGGAGGCGGUGCAGg -3'
miRNA:   3'- -UGCuGUGCUCG---GCCUUCUGCCACGUU- -5'
29648 5' -56.8 NC_006151.1 + 5251 0.77 0.296813
Target:  5'- gGCGGCGgGGGcCCGGggGGCGGaggGCGAg -3'
miRNA:   3'- -UGCUGUgCUC-GGCCuuCUGCCa--CGUU- -5'
29648 5' -56.8 NC_006151.1 + 135123 0.75 0.364248
Target:  5'- cGCGGgGCGGGCUGGGcggGGACGG-GCAGa -3'
miRNA:   3'- -UGCUgUGCUCGGCCU---UCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 20122 0.75 0.388965
Target:  5'- gGCGACG-GGGCUGGggGGCGG-GCGc -3'
miRNA:   3'- -UGCUGUgCUCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 130860 0.74 0.396591
Target:  5'- gGCGGCGCGGGCgGGAccgcaguGGGCGGcgGCGGu -3'
miRNA:   3'- -UGCUGUGCUCGgCCU-------UCUGCCa-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 98950 0.74 0.432522
Target:  5'- gGCGGCGCGGGCCGuGGacgAGGCGGcGCu- -3'
miRNA:   3'- -UGCUGUGCUCGGC-CU---UCUGCCaCGuu -5'
29648 5' -56.8 NC_006151.1 + 21386 0.73 0.44157
Target:  5'- -gGGCACGAcgGCCGGcggggcgaaGGGGCGGUGCGg -3'
miRNA:   3'- ugCUGUGCU--CGGCC---------UUCUGCCACGUu -5'
29648 5' -56.8 NC_006151.1 + 134807 0.73 0.44157
Target:  5'- gGCGGCcCGcGCCGGAcccGGACGGUGgCGAc -3'
miRNA:   3'- -UGCUGuGCuCGGCCU---UCUGCCAC-GUU- -5'
29648 5' -56.8 NC_006151.1 + 123152 0.73 0.450724
Target:  5'- aGCGGCGCGAGCUGGAgaAGACccUGCGc -3'
miRNA:   3'- -UGCUGUGCUCGGCCU--UCUGccACGUu -5'
29648 5' -56.8 NC_006151.1 + 78612 0.73 0.459981
Target:  5'- aGCGACGCGGagacgaacgcGCCGGAcgccGACGcGUGCGAg -3'
miRNA:   3'- -UGCUGUGCU----------CGGCCUu---CUGC-CACGUU- -5'
29648 5' -56.8 NC_006151.1 + 46634 0.73 0.488339
Target:  5'- uGCGACGCG-GCCGGAcGGGCGGacagGCc- -3'
miRNA:   3'- -UGCUGUGCuCGGCCU-UCUGCCa---CGuu -5'
29648 5' -56.8 NC_006151.1 + 89169 0.72 0.497974
Target:  5'- gGCGAgGCGGGCgCGGggGuCGGggGCGGa -3'
miRNA:   3'- -UGCUgUGCUCG-GCCuuCuGCCa-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 112033 0.72 0.497974
Target:  5'- gGCGggaGCugGGGCCGGcGGGCGGgcgGCGg -3'
miRNA:   3'- -UGC---UGugCUCGGCCuUCUGCCa--CGUu -5'
29648 5' -56.8 NC_006151.1 + 137143 0.72 0.507693
Target:  5'- cGCGACGCGGcGCCGGA-GAUGGccGCGc -3'
miRNA:   3'- -UGCUGUGCU-CGGCCUuCUGCCa-CGUu -5'
29648 5' -56.8 NC_006151.1 + 82757 0.72 0.517491
Target:  5'- gACGACGCGGGCaUGGu-GACGGgcacgGCAAa -3'
miRNA:   3'- -UGCUGUGCUCG-GCCuuCUGCCa----CGUU- -5'
29648 5' -56.8 NC_006151.1 + 10200 0.72 0.527365
Target:  5'- cGCGGCGCGGGCggCGGcugcaGAGGCGGcUGCGGa -3'
miRNA:   3'- -UGCUGUGCUCG--GCC-----UUCUGCC-ACGUU- -5'
29648 5' -56.8 NC_006151.1 + 5092 0.71 0.557378
Target:  5'- cGCGGCGgGcGCCGGcgGAGACGGUgGCGg -3'
miRNA:   3'- -UGCUGUgCuCGGCC--UUCUGCCA-CGUu -5'
29648 5' -56.8 NC_006151.1 + 103771 0.71 0.598095
Target:  5'- gGCGcuGCGCGAGUCGGAGcgcuGGCGGcgcUGCAGg -3'
miRNA:   3'- -UGC--UGUGCUCGGCCUU----CUGCC---ACGUU- -5'
29648 5' -56.8 NC_006151.1 + 110738 0.7 0.618633
Target:  5'- cACGcaACACgcuaGAGUCGaGAGGAUGGUGCAAc -3'
miRNA:   3'- -UGC--UGUG----CUCGGC-CUUCUGCCACGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.