Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 5' | -56.8 | NC_006151.1 | + | 89719 | 0.66 | 0.871475 |
Target: 5'- gGCGGCGCcGGCCGcGGccGCGGUGguGg -3' miRNA: 3'- -UGCUGUGcUCGGC-CUucUGCCACguU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 86726 | 0.66 | 0.871475 |
Target: 5'- cGCGGCGCGccGCCGcGAGGcCGGcgUGCGc -3' miRNA: 3'- -UGCUGUGCu-CGGC-CUUCuGCC--ACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 56569 | 0.66 | 0.871475 |
Target: 5'- gGCGACGCGccGCCGcccGAcGGGCuGGUGCGGa -3' miRNA: 3'- -UGCUGUGCu-CGGC---CU-UCUG-CCACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 141867 | 0.66 | 0.871475 |
Target: 5'- cGCGcccuCugGuGCCGGAGGGcCGG-GCAu -3' miRNA: 3'- -UGCu---GugCuCGGCCUUCU-GCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 4235 | 0.66 | 0.871475 |
Target: 5'- -gGGCGCGggcAGCCGGA--GCGG-GCAGg -3' miRNA: 3'- ugCUGUGC---UCGGCCUucUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 61782 | 0.66 | 0.863991 |
Target: 5'- uGCGGCGCGAgGCCGGccGGCuG-GCGu -3' miRNA: 3'- -UGCUGUGCU-CGGCCuuCUGcCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 64481 | 0.66 | 0.863991 |
Target: 5'- cGCGGCggggacgcccGCGGGCgCGGgcGGCGG-GCGc -3' miRNA: 3'- -UGCUG----------UGCUCG-GCCuuCUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 83020 | 0.66 | 0.863991 |
Target: 5'- cGCGGCGaGGGCCccaGGucGACGGUGgAGa -3' miRNA: 3'- -UGCUGUgCUCGG---CCuuCUGCCACgUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 10061 | 0.66 | 0.863991 |
Target: 5'- aGCGGCuccCGAGuCCGGGaaggaaAGGCGG-GCGGa -3' miRNA: 3'- -UGCUGu--GCUC-GGCCU------UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 122028 | 0.66 | 0.870737 |
Target: 5'- uCGACACGuacggcgGGCgCGuGGAGACGGagcUGCAGu -3' miRNA: 3'- uGCUGUGC-------UCG-GC-CUUCUGCC---ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 72495 | 0.66 | 0.870737 |
Target: 5'- gGCGGCGCGAGCgaaaGAAGACacugacgcgggcgGGUGCc- -3' miRNA: 3'- -UGCUGUGCUCGgc--CUUCUG-------------CCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 89488 | 0.67 | 0.797089 |
Target: 5'- cGCGGCgGCGAGCCGGuacgcGCGGgugugGCGc -3' miRNA: 3'- -UGCUG-UGCUCGGCCuuc--UGCCa----CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 4319 | 0.67 | 0.80339 |
Target: 5'- -gGGCACGcGGCCGGGcugcgcggcggcgaAGGCGGcGCGGa -3' miRNA: 3'- ugCUGUGC-UCGGCCU--------------UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 102974 | 0.67 | 0.806066 |
Target: 5'- gACGGCGCGcuGCUGGcgcagcugcugGAGGCGG-GCGAg -3' miRNA: 3'- -UGCUGUGCu-CGGCC-----------UUCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 139742 | 0.67 | 0.806066 |
Target: 5'- gGCGACAgGAGgCGGAucguccGGACGGcggGCc- -3' miRNA: 3'- -UGCUGUgCUCgGCCU------UCUGCCa--CGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 88965 | 0.67 | 0.806066 |
Target: 5'- cCGGCGC--GCgGGAAGACGGcGCAc -3' miRNA: 3'- uGCUGUGcuCGgCCUUCUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 29070 | 0.67 | 0.814884 |
Target: 5'- gGCGcCGCGGGCCccGAGACGGccgcgGCGAc -3' miRNA: 3'- -UGCuGUGCUCGGccUUCUGCCa----CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 23889 | 0.67 | 0.823534 |
Target: 5'- aGCGGguuCACGGGCUGGgcGuCGGUcGCGGg -3' miRNA: 3'- -UGCU---GUGCUCGGCCuuCuGCCA-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 55378 | 0.67 | 0.823534 |
Target: 5'- cGCGAgCGCGAGCaGGAGGuGCGGcgccUGCGc -3' miRNA: 3'- -UGCU-GUGCUCGgCCUUC-UGCC----ACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 134081 | 0.67 | 0.796183 |
Target: 5'- uGCGA-GCGAGCCcgugaccguggacGGAGGGCGGcUGCu- -3' miRNA: 3'- -UGCUgUGCUCGG-------------CCUUCUGCC-ACGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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