miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 12776 0.66 0.516264
Target:  5'- gGCC-AGC--GCGCCcuuuccucucccggCGCGCCCGCu -3'
miRNA:   3'- aCGGcUCGuaCGCGGa-------------GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 113898 0.66 0.513456
Target:  5'- gGCCGcGCG-GCGCaagacgcugacgcgCGCgGCCCGCGa -3'
miRNA:   3'- aCGGCuCGUaCGCGga------------GCG-CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 68122 0.66 0.512522
Target:  5'- cGCaCGAGCu--CGCCgcCGCuCCCGCGg -3'
miRNA:   3'- aCG-GCUCGuacGCGGa-GCGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117139 0.66 0.512522
Target:  5'- cGCgGAG-GUGCGCgaCcagGCGCCCGCu -3'
miRNA:   3'- aCGgCUCgUACGCGgaG---CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 109751 0.66 0.512522
Target:  5'- aUGCCGuGGCcgcCGCCguuggagGCGCCCGCa -3'
miRNA:   3'- -ACGGC-UCGuacGCGGag-----CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 66864 0.66 0.512522
Target:  5'- gGCCgGGGCG-GCGCgaagggCGCGCCCGg- -3'
miRNA:   3'- aCGG-CUCGUaCGCGga----GCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 18307 0.66 0.512522
Target:  5'- aGCCgGAGCGggGCGCCUCcucgggGCGCaCGUa -3'
miRNA:   3'- aCGG-CUCGUa-CGCGGAG------CGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 47909 0.66 0.512522
Target:  5'- cGCCucG-AUGCGCCccaUCGCGCCC-CGu -3'
miRNA:   3'- aCGGcuCgUACGCGG---AGCGCGGGcGC- -5'
29649 5' -63.6 NC_006151.1 + 33200 0.66 0.511588
Target:  5'- gGCCG-GCcgGCGCCcCcggagcacgcgggGCGCCCcgGCGg -3'
miRNA:   3'- aCGGCuCGuaCGCGGaG-------------CGCGGG--CGC- -5'
29649 5' -63.6 NC_006151.1 + 98959 0.66 0.511588
Target:  5'- gGCCGuggacgaGGCG-GCGCUg-GUGCCCGUGg -3'
miRNA:   3'- aCGGC-------UCGUaCGCGGagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 70998 0.66 0.511588
Target:  5'- gGCCGuGGCcaucgugggcgccAUGCGCCgCGaGCUCGCGg -3'
miRNA:   3'- aCGGC-UCG-------------UACGCGGaGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 38353 0.67 0.50693
Target:  5'- gGcCCGAGCA-GCccgGCCUCgucgucccagcgccgGCGCCgGCGg -3'
miRNA:   3'- aC-GGCUCGUaCG---CGGAG---------------CGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 81669 0.67 0.503217
Target:  5'- cGCacgGAGCGgcgguaCGCCUCGgcgacgguCGCCCGCGc -3'
miRNA:   3'- aCGg--CUCGUac----GCGGAGC--------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 63753 0.67 0.503217
Target:  5'- cGUCG-GCGggGCGuCCUCgGCGCCCccGCGu -3'
miRNA:   3'- aCGGCuCGUa-CGC-GGAG-CGCGGG--CGC- -5'
29649 5' -63.6 NC_006151.1 + 104550 0.67 0.503217
Target:  5'- gGCCGAGCuggcCGCCcUGgGCgCGCGg -3'
miRNA:   3'- aCGGCUCGuac-GCGGaGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 75856 0.67 0.503217
Target:  5'- cGUCGA-CGggGCGCCccugCGUGUCCGCGu -3'
miRNA:   3'- aCGGCUcGUa-CGCGGa---GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 50448 0.67 0.503217
Target:  5'- gGCCuGGGCAccgcccgcggGCG-CUCGCGCCagCGCGg -3'
miRNA:   3'- aCGG-CUCGUa---------CGCgGAGCGCGG--GCGC- -5'
29649 5' -63.6 NC_006151.1 + 39454 0.67 0.503217
Target:  5'- gGCCGcccaGUGCGCCgugCGCugGCCCGgGu -3'
miRNA:   3'- aCGGCucg-UACGCGGa--GCG--CGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 31022 0.67 0.503217
Target:  5'- cGCCGccGCG-GC-CCUCGCGgCCCGgGa -3'
miRNA:   3'- aCGGCu-CGUaCGcGGAGCGC-GGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 138479 0.67 0.503217
Target:  5'- gGUgGGGCAaucaUGCuCCUCggcggGCGCCCGCu -3'
miRNA:   3'- aCGgCUCGU----ACGcGGAG-----CGCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.