miRNA display CGI


Results 41 - 60 of 389 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 66007 0.66 0.540839
Target:  5'- -uCCGcGGCGUcgaGCGCCUCcgcaaagucCGCCCGCGu -3'
miRNA:   3'- acGGC-UCGUA---CGCGGAGc--------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 71808 0.66 0.540839
Target:  5'- gGCCGAGCucgcGCGUggCGCuGCCCaGCu -3'
miRNA:   3'- aCGGCUCGua--CGCGgaGCG-CGGG-CGc -5'
29649 5' -63.6 NC_006151.1 + 81777 0.66 0.540839
Target:  5'- -aCCGGGac-GCGCUcggCGCGCCCGuCGa -3'
miRNA:   3'- acGGCUCguaCGCGGa--GCGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 130523 0.66 0.540839
Target:  5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3'
miRNA:   3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 133403 0.66 0.540839
Target:  5'- gGCCGAGCggGCgGUCUUG-GC-CGCGg -3'
miRNA:   3'- aCGGCUCGuaCG-CGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 95207 0.66 0.535131
Target:  5'- aUGCCcagcGAGCGgcUGCGCCgCacgcccucgaccgagGCGCCCGuCGg -3'
miRNA:   3'- -ACGG----CUCGU--ACGCGGaG---------------CGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 104704 0.66 0.531337
Target:  5'- gUGCCGAGCAccgaGCuGCUgCGCGgCgCCGUGa -3'
miRNA:   3'- -ACGGCUCGUa---CG-CGGaGCGC-G-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 34599 0.66 0.531337
Target:  5'- cGCCcucgGAGCGcGCGCCgagCGCGaggCGCGg -3'
miRNA:   3'- aCGG----CUCGUaCGCGGa--GCGCgg-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 54952 0.66 0.531337
Target:  5'- cUGCgCGAGCAcgcGCGCCUC-UGCCaGCu -3'
miRNA:   3'- -ACG-GCUCGUa--CGCGGAGcGCGGgCGc -5'
29649 5' -63.6 NC_006151.1 + 124459 0.66 0.531337
Target:  5'- cGUCGAGguggaccUGCGCCccUCGCGCCugaaCGCGc -3'
miRNA:   3'- aCGGCUCgu-----ACGCGG--AGCGCGG----GCGC- -5'
29649 5' -63.6 NC_006151.1 + 55083 0.66 0.531337
Target:  5'- gGCCGcGGC--GCGCCUCGUGCgccucaUCGUGa -3'
miRNA:   3'- aCGGC-UCGuaCGCGGAGCGCG------GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 94725 0.66 0.528499
Target:  5'- aGCCGcgccacggcgucccGGCGcGCGCaCUCGCGCggaaacaggcgCCGCa -3'
miRNA:   3'- aCGGC--------------UCGUaCGCG-GAGCGCG-----------GGCGc -5'
29649 5' -63.6 NC_006151.1 + 93567 0.66 0.521897
Target:  5'- cGCCGcgggGGCGggcGCGCCaaagagCGgGCUCGCGc -3'
miRNA:   3'- aCGGC----UCGUa--CGCGGa-----GCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 97919 0.66 0.521897
Target:  5'- aUGCCGucGC---CGCCgaggcCGCGCCCGCc -3'
miRNA:   3'- -ACGGCu-CGuacGCGGa----GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 97459 0.66 0.521897
Target:  5'- cGCCGAGCucgggcagGCGgCUCacCGCCaCGUGg -3'
miRNA:   3'- aCGGCUCGua------CGCgGAGc-GCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 59355 0.66 0.521897
Target:  5'- gGCCGcGCGcacgggGCGCCgCGCGgCCGUc -3'
miRNA:   3'- aCGGCuCGUa-----CGCGGaGCGCgGGCGc -5'
29649 5' -63.6 NC_006151.1 + 56383 0.66 0.521897
Target:  5'- cUGCUGcacGUcgGCGCCaCGCGCgCGCu -3'
miRNA:   3'- -ACGGCu--CGuaCGCGGaGCGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 117268 0.66 0.521897
Target:  5'- gGCCGcGCGcgGcCGCCgccgacagCGCGCgCGCGa -3'
miRNA:   3'- aCGGCuCGUa-C-GCGGa-------GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 39848 0.66 0.521897
Target:  5'- gGCC--GCcgGgGCCUCGCcgaGCuCCGCGg -3'
miRNA:   3'- aCGGcuCGuaCgCGGAGCG---CG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 63853 0.66 0.519077
Target:  5'- gGCCGGGCgAUggaguacagaacccGCGCagCGUGUCCGCGu -3'
miRNA:   3'- aCGGCUCG-UA--------------CGCGgaGCGCGGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.