Results 21 - 40 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 89137 | 0.66 | 0.550397 |
Target: 5'- gGaCCGGGg--GCGUCgagacCGCGCCCGCc -3' miRNA: 3'- aC-GGCUCguaCGCGGa----GCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 83237 | 0.66 | 0.550397 |
Target: 5'- aGCgCG-GCGcGCGCCcccagucgUCGCGCCaGCGg -3' miRNA: 3'- aCG-GCuCGUaCGCGG--------AGCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 70645 | 0.66 | 0.550397 |
Target: 5'- gGCCGcGCGcgagGCGCCcguccucaCGCGCgCCGCc -3' miRNA: 3'- aCGGCuCGUa---CGCGGa-------GCGCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 58673 | 0.66 | 0.550397 |
Target: 5'- gGCCGc-CAUgaccGCGCCgugCGCGCCgCGCc -3' miRNA: 3'- aCGGCucGUA----CGCGGa--GCGCGG-GCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 13181 | 0.66 | 0.550397 |
Target: 5'- cGCCGcGGC---CGUCUCgGgGCCCGCGg -3' miRNA: 3'- aCGGC-UCGuacGCGGAG-CgCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 135101 | 0.66 | 0.550397 |
Target: 5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3' miRNA: 3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 4022 | 0.66 | 0.550397 |
Target: 5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3' miRNA: 3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 38689 | 0.66 | 0.550397 |
Target: 5'- -cCCGGcGCAaGCGCCgcucccucggacUCGgGCCCGCu -3' miRNA: 3'- acGGCU-CGUaCGCGG------------AGCgCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 57073 | 0.66 | 0.550397 |
Target: 5'- -aCCGGGCcgGCGCCgcgcagGCGCaCGCa -3' miRNA: 3'- acGGCUCGuaCGCGGag----CGCGgGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 65503 | 0.66 | 0.550397 |
Target: 5'- cGCCG-GCGgagcGCGCCUC-C-UCCGCGg -3' miRNA: 3'- aCGGCuCGUa---CGCGGAGcGcGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 94255 | 0.66 | 0.550397 |
Target: 5'- cGCUGAGCGcgGCcacguccuugGCgUCGuCGCCCaGCGg -3' miRNA: 3'- aCGGCUCGUa-CG----------CGgAGC-GCGGG-CGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 115577 | 0.66 | 0.550397 |
Target: 5'- cGCgCGGGCAgGuCGCgCUCGagcaGCUCGCGc -3' miRNA: 3'- aCG-GCUCGUaC-GCG-GAGCg---CGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 117785 | 0.66 | 0.550397 |
Target: 5'- -uCCGGGCGggGCGCCaCGC-CCgGCGg -3' miRNA: 3'- acGGCUCGUa-CGCGGaGCGcGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 135863 | 0.66 | 0.550397 |
Target: 5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3' miRNA: 3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 17470 | 0.66 | 0.549439 |
Target: 5'- uUGCCGcGGCGUGU-CCUCgucggcgGCGCgCCGCu -3' miRNA: 3'- -ACGGC-UCGUACGcGGAG-------CGCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 56057 | 0.66 | 0.544656 |
Target: 5'- cGCUGAcGC-UGCGCCUCgagagcggcgagacgGUGuCCUGCGa -3' miRNA: 3'- aCGGCU-CGuACGCGGAG---------------CGC-GGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 130523 | 0.66 | 0.540839 |
Target: 5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3' miRNA: 3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 81777 | 0.66 | 0.540839 |
Target: 5'- -aCCGGGac-GCGCUcggCGCGCCCGuCGa -3' miRNA: 3'- acGGCUCguaCGCGGa--GCGCGGGC-GC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 71808 | 0.66 | 0.540839 |
Target: 5'- gGCCGAGCucgcGCGUggCGCuGCCCaGCu -3' miRNA: 3'- aCGGCUCGua--CGCGgaGCG-CGGG-CGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 66007 | 0.66 | 0.540839 |
Target: 5'- -uCCGcGGCGUcgaGCGCCUCcgcaaagucCGCCCGCGu -3' miRNA: 3'- acGGC-UCGUA---CGCGGAGc--------GCGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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