miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 11499 0.67 0.457881
Target:  5'- cGCUGAGUGcUGCcCC-CGCcccGCCCGCGg -3'
miRNA:   3'- aCGGCUCGU-ACGcGGaGCG---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 11908 0.67 0.457881
Target:  5'- cGUCGGGguUuucGCGcCCUCGCGCCgcCGCc -3'
miRNA:   3'- aCGGCUCguA---CGC-GGAGCGCGG--GCGc -5'
29649 5' -63.6 NC_006151.1 + 12776 0.66 0.516264
Target:  5'- gGCC-AGC--GCGCCcuuuccucucccggCGCGCCCGCu -3'
miRNA:   3'- aCGGcUCGuaCGCGGa-------------GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 13181 0.66 0.550397
Target:  5'- cGCCGcGGC---CGUCUCgGgGCCCGCGg -3'
miRNA:   3'- aCGGC-UCGuacGCGGAG-CgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 13421 0.7 0.308497
Target:  5'- aGCCGGGCccGCGUCcccgGgGCCCGCa -3'
miRNA:   3'- aCGGCUCGuaCGCGGag--CgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 15270 0.68 0.431751
Target:  5'- cGcCCGAGCAgaGCGCCccgcugcgcagCGCGCUgCGCGa -3'
miRNA:   3'- aC-GGCUCGUa-CGCGGa----------GCGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 15890 0.68 0.440365
Target:  5'- cGCCGGGgGacgcGCGCCccgaCGCGgCCCGCc -3'
miRNA:   3'- aCGGCUCgUa---CGCGGa---GCGC-GGGCGc -5'
29649 5' -63.6 NC_006151.1 + 15922 0.67 0.466778
Target:  5'- cGCCGccccgugaGGCGg--GCCUCGC-CCCGCGc -3'
miRNA:   3'- aCGGC--------UCGUacgCGGAGCGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 16881 0.68 0.449076
Target:  5'- cGCgGGGCGcgcucGCGuCCguugcCGCGCCCGCc -3'
miRNA:   3'- aCGgCUCGUa----CGC-GGa----GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 16948 0.67 0.475764
Target:  5'- -uCUGGGCAUGCaggGCCUCGUccacucGCCgGCGu -3'
miRNA:   3'- acGGCUCGUACG---CGGAGCG------CGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 17084 0.67 0.475764
Target:  5'- cGCCGGGUcagGCGC---GCGCCCGuCGg -3'
miRNA:   3'- aCGGCUCGua-CGCGgagCGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 17470 0.66 0.549439
Target:  5'- uUGCCGcGGCGUGU-CCUCgucggcgGCGCgCCGCu -3'
miRNA:   3'- -ACGGC-UCGUACGcGGAG-------CGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 17933 0.69 0.358916
Target:  5'- cGCCcaucaGGCAgcggcgGCGUCUCcgGCGCCCGCc -3'
miRNA:   3'- aCGGc----UCGUa-----CGCGGAG--CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 18307 0.66 0.512522
Target:  5'- aGCCgGAGCGggGCGCCUCcucgggGCGCaCGUa -3'
miRNA:   3'- aCGG-CUCGUa-CGCGGAG------CGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 18516 0.76 0.128486
Target:  5'- gGCgaGAGCAUGCGCgUCccCGCCCGCGu -3'
miRNA:   3'- aCGg-CUCGUACGCGgAGc-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 20167 0.69 0.390211
Target:  5'- cGCCGGGCc-GCGCCcgggUCGCGgCCGg- -3'
miRNA:   3'- aCGGCUCGuaCGCGG----AGCGCgGGCgc -5'
29649 5' -63.6 NC_006151.1 + 20780 0.82 0.052642
Target:  5'- cGCCGGGCGaGCGgCUCGCGCuuGCGc -3'
miRNA:   3'- aCGGCUCGUaCGCgGAGCGCGggCGC- -5'
29649 5' -63.6 NC_006151.1 + 21168 0.68 0.440365
Target:  5'- gGaCCGGGC-UGCGCUUUuagcucgucgGUGUCCGCGg -3'
miRNA:   3'- aC-GGCUCGuACGCGGAG----------CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 21549 0.72 0.251868
Target:  5'- gGCCgGGGCcUGgGCCUCGgcgaGCCCGCc -3'
miRNA:   3'- aCGG-CUCGuACgCGGAGCg---CGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 22314 0.67 0.4641
Target:  5'- cGCCGAGCGUcguccgggcgaccaGCGCCgccaauaGCGCU-GCGa -3'
miRNA:   3'- aCGGCUCGUA--------------CGCGGag-----CGCGGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.