Results 1 - 20 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 696 | 0.68 | 0.431751 |
Target: 5'- cGCCGAGCcUGCcCCUUccgucgcaccggGgGUCCGCGg -3' miRNA: 3'- aCGGCUCGuACGcGGAG------------CgCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 2281 | 0.69 | 0.358916 |
Target: 5'- gGCCG-GCGggGCGCC-CGCGgCgGCGa -3' miRNA: 3'- aCGGCuCGUa-CGCGGaGCGCgGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 2386 | 0.69 | 0.358916 |
Target: 5'- gGCCG-GCAgGC-CCUCGgGgCCGCGg -3' miRNA: 3'- aCGGCuCGUaCGcGGAGCgCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 2482 | 0.7 | 0.336623 |
Target: 5'- gGCCGcGCG-GUGCCcgaaggCgGCGCCCGCGu -3' miRNA: 3'- aCGGCuCGUaCGCGGa-----G-CGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 2906 | 0.69 | 0.351372 |
Target: 5'- aGCacgauGAGCcgGCGCCgcgcCGCGCcgagCCGCGa -3' miRNA: 3'- aCGg----CUCGuaCGCGGa---GCGCG----GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 3132 | 0.68 | 0.423236 |
Target: 5'- gGCCGGGCGcgggGCGCCcucggCGgGCUCgGCGc -3' miRNA: 3'- aCGGCUCGUa---CGCGGa----GCgCGGG-CGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 3254 | 0.68 | 0.414823 |
Target: 5'- gGCgGAGCGggGCGCCgcgGCGCgCgGCGa -3' miRNA: 3'- aCGgCUCGUa-CGCGGag-CGCG-GgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 3406 | 0.67 | 0.503217 |
Target: 5'- gGCCGcGGCGUGUggGUCUCGCcgGCCgggaCGCGg -3' miRNA: 3'- aCGGC-UCGUACG--CGGAGCG--CGG----GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 3941 | 0.67 | 0.457881 |
Target: 5'- gGCCGGGCGcGgGCUccgCGgGCCCGgGc -3' miRNA: 3'- aCGGCUCGUaCgCGGa--GCgCGGGCgC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 4022 | 0.66 | 0.550397 |
Target: 5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3' miRNA: 3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 4139 | 0.66 | 0.540839 |
Target: 5'- gGCCGGGCcgGCcCCggggaUCGCG-UCGCGg -3' miRNA: 3'- aCGGCUCGuaCGcGG-----AGCGCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 5337 | 0.69 | 0.398309 |
Target: 5'- gGCCGcGGCGgaggGCGcCCUCuccggcgcgGCGCCgGCGg -3' miRNA: 3'- aCGGC-UCGUa---CGC-GGAG---------CGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 5531 | 0.72 | 0.246133 |
Target: 5'- gGCCGAGgAUcgaGcCGCCUCGCGgCgGCGg -3' miRNA: 3'- aCGGCUCgUA---C-GCGGAGCGCgGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 7641 | 0.68 | 0.414823 |
Target: 5'- cGCCccaCccGCGCCUCGCGCUCgGCGc -3' miRNA: 3'- aCGGcucGuaCGCGGAGCGCGGG-CGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 8321 | 0.68 | 0.431751 |
Target: 5'- aGCCcccgGGGCGcGCggGCCucgaUCGCGCCCGCc -3' miRNA: 3'- aCGG----CUCGUaCG--CGG----AGCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 10625 | 0.71 | 0.27591 |
Target: 5'- cGCCc-GCGUGCG-CUCGUGCCgGCGc -3' miRNA: 3'- aCGGcuCGUACGCgGAGCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 10677 | 0.7 | 0.318133 |
Target: 5'- cGCgGAGCGcGcCGCCcccccgugaucacguUCGCGCaCCGCGg -3' miRNA: 3'- aCGgCUCGUaC-GCGG---------------AGCGCG-GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 10935 | 0.71 | 0.301752 |
Target: 5'- cGCCGAGgGUGgGCgCgCGUGUCCGUGu -3' miRNA: 3'- aCGGCUCgUACgCG-GaGCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 11032 | 0.68 | 0.431751 |
Target: 5'- cGCCGGGCcgGCcgGCCggGgGCCCGg- -3' miRNA: 3'- aCGGCUCGuaCG--CGGagCgCGGGCgc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 11350 | 0.68 | 0.431751 |
Target: 5'- gGCCGcccGCggGCGCUaccgCGCGCuCCGCu -3' miRNA: 3'- aCGGCu--CGuaCGCGGa---GCGCG-GGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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