miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 142297 0.71 0.279041
Target:  5'- gGCCGggacgagAGCGaGCGCCguaugggggcccgCGCGCUCGCGg -3'
miRNA:   3'- aCGGC-------UCGUaCGCGGa------------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 141887 0.7 0.343941
Target:  5'- gGCCGGGCAUcgaGCuccaCCUccaCGCGCcCCGCGg -3'
miRNA:   3'- aCGGCUCGUA---CGc---GGA---GCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 140286 0.73 0.204081
Target:  5'- cGaCGAGCucGUGCGCCggCGcCGCCUGCGg -3'
miRNA:   3'- aCgGCUCG--UACGCGGa-GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 139444 0.66 0.569661
Target:  5'- cGaCGGGUuaaagGCGCCcCGcCGCCCGCc -3'
miRNA:   3'- aCgGCUCGua---CGCGGaGC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 139134 0.67 0.493068
Target:  5'- cGCCc--CGUGCGcCCUCGUcuucccgcuguacGCCCGCGc -3'
miRNA:   3'- aCGGcucGUACGC-GGAGCG-------------CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 138972 0.73 0.199286
Target:  5'- gGCCGAGCucgcgacGCGCCgcgcCGCGCucagCCGCGa -3'
miRNA:   3'- aCGGCUCGua-----CGCGGa---GCGCG----GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 138702 0.77 0.122239
Target:  5'- cGCUGAGCccgGCGCUgCGCGCCgCGCGc -3'
miRNA:   3'- aCGGCUCGua-CGCGGaGCGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 138479 0.67 0.503217
Target:  5'- gGUgGGGCAaucaUGCuCCUCggcggGCGCCCGCu -3'
miRNA:   3'- aCGgCUCGU----ACGcGGAG-----CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 137731 0.68 0.440365
Target:  5'- cGCCGuacgcgguGGCcgGCGCCgacaCG-GUCCGCGg -3'
miRNA:   3'- aCGGC--------UCGuaCGCGGa---GCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 137614 0.68 0.423236
Target:  5'- gGCgCGGGCGgggaccccgGCGCCUCcgcccuCGUCCGCGc -3'
miRNA:   3'- aCG-GCUCGUa--------CGCGGAGc-----GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 137408 0.7 0.315357
Target:  5'- cGCCGGGgG-GCGcCCUCGCcGCcgCCGCGg -3'
miRNA:   3'- aCGGCUCgUaCGC-GGAGCG-CG--GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 137314 0.69 0.390211
Target:  5'- cGCCGcGCG-GUGCUcgaCGCGCUCGCGc -3'
miRNA:   3'- aCGGCuCGUaCGCGGa--GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 137260 0.67 0.475764
Target:  5'- cGCCucGC--GCGCC-CgGUGCCCGCGg -3'
miRNA:   3'- aCGGcuCGuaCGCGGaG-CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 136988 0.71 0.269732
Target:  5'- cGCCGGGCGgcggGCGCg-CGCGCaCgGCGc -3'
miRNA:   3'- aCGGCUCGUa---CGCGgaGCGCG-GgCGC- -5'
29649 5' -63.6 NC_006151.1 + 136937 0.73 0.21907
Target:  5'- aGCCGGGCGccgacgGCGCCguccugCGcCGCCUGCu -3'
miRNA:   3'- aCGGCUCGUa-----CGCGGa-----GC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 136878 0.76 0.125327
Target:  5'- cGUCGAGgA-GCGCCUCGCGCCCcaCGg -3'
miRNA:   3'- aCGGCUCgUaCGCGGAGCGCGGGc-GC- -5'
29649 5' -63.6 NC_006151.1 + 136829 0.73 0.203597
Target:  5'- cGCgCGGGCucUGCgacgcggccgccgGCCUCGCGCgCCGCGu -3'
miRNA:   3'- aCG-GCUCGu-ACG-------------CGGAGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 136745 0.8 0.066438
Target:  5'- cGCCGAGCGUcgcGCGCCUCGC-CCCGg- -3'
miRNA:   3'- aCGGCUCGUA---CGCGGAGCGcGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 136069 0.84 0.036545
Target:  5'- cGCCGAGUAcGCGCCggaGCGCCCGCu -3'
miRNA:   3'- aCGGCUCGUaCGCGGag-CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 136040 0.69 0.374342
Target:  5'- -cUCGAGCAggUGCGCC-CGCGCaCCgGCa -3'
miRNA:   3'- acGGCUCGU--ACGCGGaGCGCG-GG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.