Results 1 - 20 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 35093 | 1.07 | 0.000738 |
Target: 5'- gUGCCGAGCAUGCGCCUCGCGCCCGCGc -3' miRNA: 3'- -ACGGCUCGUACGCGGAGCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 77959 | 0.84 | 0.0356 |
Target: 5'- cGCUGAGCGUGCGCC-CGCGCCgGUa -3' miRNA: 3'- aCGGCUCGUACGCGGaGCGCGGgCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 136069 | 0.84 | 0.036545 |
Target: 5'- cGCCGAGUAcGCGCCggaGCGCCCGCu -3' miRNA: 3'- aCGGCUCGUaCGCGGag-CGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 86850 | 0.83 | 0.045866 |
Target: 5'- cGCCGAGCGcaGCGCCcggcgacuacaucuUCGUGCCCGCGg -3' miRNA: 3'- aCGGCUCGUa-CGCGG--------------AGCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 20780 | 0.82 | 0.052642 |
Target: 5'- cGCCGGGCGaGCGgCUCGCGCuuGCGc -3' miRNA: 3'- aCGGCUCGUaCGCgGAGCGCGggCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 82297 | 0.81 | 0.059921 |
Target: 5'- cGCgGGGCAgcGCGCCUcCGCGUCCGCGa -3' miRNA: 3'- aCGgCUCGUa-CGCGGA-GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 136745 | 0.8 | 0.066438 |
Target: 5'- cGCCGAGCGUcgcGCGCCUCGC-CCCGg- -3' miRNA: 3'- aCGGCUCGUA---CGCGGAGCGcGGGCgc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 106692 | 0.8 | 0.073634 |
Target: 5'- cGCCGGGCGccgGCGaCCUguaCGCGCCCGUGg -3' miRNA: 3'- aCGGCUCGUa--CGC-GGA---GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 39115 | 0.77 | 0.105153 |
Target: 5'- cGCCGAGCccgccgaggGCGCCcCGCGCCCGg- -3' miRNA: 3'- aCGGCUCGua-------CGCGGaGCGCGGGCgc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 73102 | 0.77 | 0.110583 |
Target: 5'- cGCCGuGCAccuCGCCggcggCGCGCCCGCGc -3' miRNA: 3'- aCGGCuCGUac-GCGGa----GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 120354 | 0.77 | 0.116275 |
Target: 5'- gGCCGGGCucgcggGCGCCUaccaGCGCCCGg- -3' miRNA: 3'- aCGGCUCGua----CGCGGAg---CGCGGGCgc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 103552 | 0.77 | 0.119222 |
Target: 5'- cGCCGGGCAgccgcucgggGCGCUggucaaCGCGCUCGCGg -3' miRNA: 3'- aCGGCUCGUa---------CGCGGa-----GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 133163 | 0.77 | 0.119222 |
Target: 5'- gGCgCGGGCGUGgGCCUCG-GCCaCGCGu -3' miRNA: 3'- aCG-GCUCGUACgCGGAGCgCGG-GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 104112 | 0.77 | 0.121024 |
Target: 5'- gGCCGAGUucGUGCGCCUgCGCGacguggcggccgaCCGCGg -3' miRNA: 3'- aCGGCUCG--UACGCGGA-GCGCg------------GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 138702 | 0.77 | 0.122239 |
Target: 5'- cGCUGAGCccgGCGCUgCGCGCCgCGCGc -3' miRNA: 3'- aCGGCUCGua-CGCGGaGCGCGG-GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 136878 | 0.76 | 0.125327 |
Target: 5'- cGUCGAGgA-GCGCCUCGCGCCCcaCGg -3' miRNA: 3'- aCGGCUCgUaCGCGGAGCGCGGGc-GC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 104784 | 0.76 | 0.128486 |
Target: 5'- cGCgGAGcCAUGCGCgcgCUCGUGCgCCGCGa -3' miRNA: 3'- aCGgCUC-GUACGCG---GAGCGCG-GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 18516 | 0.76 | 0.128486 |
Target: 5'- gGCgaGAGCAUGCGCgUCccCGCCCGCGu -3' miRNA: 3'- aCGg-CUCGUACGCGgAGc-GCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 120316 | 0.76 | 0.131719 |
Target: 5'- gGCuCGGGCAgccucucgGaCGCCgcgCGCGCCCGCGu -3' miRNA: 3'- aCG-GCUCGUa-------C-GCGGa--GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 118328 | 0.76 | 0.132047 |
Target: 5'- -cCCGAGCA-GCGCCgcgcccgcccucucgCGCGCCUGCGa -3' miRNA: 3'- acGGCUCGUaCGCGGa--------------GCGCGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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