miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 27198 0.72 0.240507
Target:  5'- gGCCGcGCAgaagGCGCCggggcccCGCGCgCCGUGg -3'
miRNA:   3'- aCGGCuCGUa---CGCGGa------GCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 28309 0.66 0.568694
Target:  5'- gGCCGGcGCGUccccgggGCGCC-CGCcCCCGgGg -3'
miRNA:   3'- aCGGCU-CGUA-------CGCGGaGCGcGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 28558 0.68 0.431751
Target:  5'- aGCCGuGCccGCGUCcCGggaGCCCGCa -3'
miRNA:   3'- aCGGCuCGuaCGCGGaGCg--CGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 30895 0.73 0.21907
Target:  5'- cGgCGAGCGgaGCGCgCgguaGCGCCCGCGg -3'
miRNA:   3'- aCgGCUCGUa-CGCG-Gag--CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 31022 0.67 0.503217
Target:  5'- cGCCGccGCG-GC-CCUCGCGgCCCGgGa -3'
miRNA:   3'- aCGGCu-CGUaCGcGGAGCGC-GGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 31716 0.71 0.27591
Target:  5'- cGCCGGGCGgaacgggGCGUggagagGCGCCCGCGc -3'
miRNA:   3'- aCGGCUCGUa------CGCGgag---CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 31749 0.68 0.42239
Target:  5'- nGCCGGGgAcGCGCCUgcggcggcgggcgCGCGCCgGgCGg -3'
miRNA:   3'- aCGGCUCgUaCGCGGA-------------GCGCGGgC-GC- -5'
29649 5' -63.6 NC_006151.1 + 33200 0.66 0.511588
Target:  5'- gGCCG-GCcgGCGCCcCcggagcacgcgggGCGCCCcgGCGg -3'
miRNA:   3'- aCGGCuCGuaCGCGGaG-------------CGCGGG--CGC- -5'
29649 5' -63.6 NC_006151.1 + 33893 0.69 0.374342
Target:  5'- -cCCGggGGCggGgGCCUCGCGCcuCCGCGu -3'
miRNA:   3'- acGGC--UCGuaCgCGGAGCGCG--GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 34243 0.71 0.288604
Target:  5'- gGCCGAGCcggucucGCGCCcccUCcCGCCCGCc -3'
miRNA:   3'- aCGGCUCGua-----CGCGG---AGcGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 34599 0.66 0.531337
Target:  5'- cGCCcucgGAGCGcGCGCCgagCGCGaggCGCGg -3'
miRNA:   3'- aCGG----CUCGUaCGCGGa--GCGCgg-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 35093 1.07 0.000738
Target:  5'- gUGCCGAGCAUGCGCCUCGCGCCCGCGc -3'
miRNA:   3'- -ACGGCUCGUACGCGGAGCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 35424 0.73 0.224271
Target:  5'- gGCCGGGCAUGCaaaugguCCUCGCGaggaaguucCUCGCGa -3'
miRNA:   3'- aCGGCUCGUACGc------GGAGCGC---------GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 36109 0.71 0.288604
Target:  5'- gGCCGAgGCcgcCGuCCUCGCGgCCGCGg -3'
miRNA:   3'- aCGGCU-CGuacGC-GGAGCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 36619 0.69 0.366573
Target:  5'- cGCCGGGCcgGU--CUCgGCGCCCgGCGg -3'
miRNA:   3'- aCGGCUCGuaCGcgGAG-CGCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 36916 0.68 0.440365
Target:  5'- cGCCgGAGag-GCGCCcuccgcCGCGgCCGCGg -3'
miRNA:   3'- aCGG-CUCguaCGCGGa-----GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 37152 0.69 0.358916
Target:  5'- cGCCGGGCcgccacCGUCUCcgccgGCGCCCGCc -3'
miRNA:   3'- aCGGCUCGuac---GCGGAG-----CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 37479 0.68 0.431751
Target:  5'- cGCCGcGGCcgG-GCC-CGUGCCCGUc -3'
miRNA:   3'- aCGGC-UCGuaCgCGGaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 37884 0.72 0.229577
Target:  5'- cGCCGGGgAgGCGaccgucgaggcCCUCuGCGCCCGCGu -3'
miRNA:   3'- aCGGCUCgUaCGC-----------GGAG-CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 37937 0.67 0.493987
Target:  5'- cGCCGcGCA-GCccgGCCgCGUGCcCCGCGa -3'
miRNA:   3'- aCGGCuCGUaCG---CGGaGCGCG-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.