miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2965 5' -54.5 NC_001493.1 + 88015 1.13 0.001986
Target:  5'- cGCGGCGUACGAGGAGCUGGAUCUACCc -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 88057 1.05 0.007003
Target:  5'- cGCGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87877 1.05 0.007003
Target:  5'- cGCGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87973 0.98 0.019651
Target:  5'- cGgGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87931 0.98 0.019651
Target:  5'- cGgGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87823 0.84 0.162281
Target:  5'- cGCGGCGUACGAGGAGCcGGcUCcACg -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCuAGaUGg -5'
2965 5' -54.5 NC_001493.1 + 9272 0.81 0.260492
Target:  5'- -aGGCGgGCGuGGGGCUGGA-CUACCu -3'
miRNA:   3'- cgCCGCaUGCuCCUCGACCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 124826 0.81 0.260492
Target:  5'- -aGGCGgGCGuGGGGCUGGA-CUACCu -3'
miRNA:   3'- cgCCGCaUGCuCCUCGACCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 30770 0.73 0.645533
Target:  5'- cGCGGUGUacggcACGAGGGGCguugccgGGAgc-GCCa -3'
miRNA:   3'- -CGCCGCA-----UGCUCCUCGa------CCUagaUGG- -5'
2965 5' -54.5 NC_001493.1 + 106989 0.72 0.655841
Target:  5'- gGCGGUGUGUGucagccuguGGGAGCucggucugaUGGAUCUACUg -3'
miRNA:   3'- -CGCCGCAUGC---------UCCUCG---------ACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 81239 0.71 0.746672
Target:  5'- -aGGCGauCGAGGAGgucgUGGGUCUGCUc -3'
miRNA:   3'- cgCCGCauGCUCCUCg---ACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 19547 0.71 0.756379
Target:  5'- gGCGGCcgccgugaagACGAGaGAGCUGGccagcacgcUCUACCu -3'
miRNA:   3'- -CGCCGca--------UGCUC-CUCGACCu--------AGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 93358 0.7 0.784792
Target:  5'- -gGGgGUuCGGGGAcauGCuccaUGGAUCUGCCa -3'
miRNA:   3'- cgCCgCAuGCUCCU---CG----ACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 115700 0.69 0.811069
Target:  5'- gGgGGCGUgggggugGCGAGGgugGGuCUGGAUCaacgGCCu -3'
miRNA:   3'- -CgCCGCA-------UGCUCC---UC-GACCUAGa---UGG- -5'
2965 5' -54.5 NC_001493.1 + 73530 0.69 0.820684
Target:  5'- aCGGCaGUcgggACG-GGAGCcuccUGGAUCUACUc -3'
miRNA:   3'- cGCCG-CA----UGCuCCUCG----ACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 70486 0.68 0.883644
Target:  5'- uCGGUcacGUACGAGGAcGUUuacacGaGAUCUACCa -3'
miRNA:   3'- cGCCG---CAUGCUCCU-CGA-----C-CUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 5756 0.68 0.883644
Target:  5'- aGCGGUGUGgGAGGGGUguccagcaGGcgC-GCCa -3'
miRNA:   3'- -CGCCGCAUgCUCCUCGa-------CCuaGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 121310 0.68 0.883644
Target:  5'- aGCGGUGUGgGAGGGGUguccagcaGGcgC-GCCa -3'
miRNA:   3'- -CGCCGCAUgCUCCUCGa-------CCuaGaUGG- -5'
2965 5' -54.5 NC_001493.1 + 87065 0.68 0.890552
Target:  5'- cCGGauacuauacaCGUACGGGGAGCaGGAUgaACUc -3'
miRNA:   3'- cGCC----------GCAUGCUCCUCGaCCUAgaUGG- -5'
2965 5' -54.5 NC_001493.1 + 51532 0.68 0.890552
Target:  5'- -aGGCG-ACGAGGGGgacCUGGA-CcGCCa -3'
miRNA:   3'- cgCCGCaUGCUCCUC---GACCUaGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.