miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2965 5' -54.5 NC_001493.1 + 9272 0.81 0.260492
Target:  5'- -aGGCGgGCGuGGGGCUGGA-CUACCu -3'
miRNA:   3'- cgCCGCaUGCuCCUCGACCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 119347 0.66 0.950817
Target:  5'- cGCGGCGguuuCGAGGugauguGC-GGGUCcauCCu -3'
miRNA:   3'- -CGCCGCau--GCUCCu-----CGaCCUAGau-GG- -5'
2965 5' -54.5 NC_001493.1 + 3793 0.66 0.950817
Target:  5'- cGCGGCGguuuCGAGGugauguGC-GGGUCcauCCu -3'
miRNA:   3'- -CGCCGCau--GCUCCu-----CGaCCUAGau-GG- -5'
2965 5' -54.5 NC_001493.1 + 69134 0.66 0.94203
Target:  5'- aCGGUGUGCGAcuggguugGGGGUcgGGA-CUACUc -3'
miRNA:   3'- cGCCGCAUGCU--------CCUCGa-CCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 82940 0.66 0.94203
Target:  5'- cGgGGUGUACGGGGGGCgGcGAagCUAa- -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaC-CUa-GAUgg -5'
2965 5' -54.5 NC_001493.1 + 58507 0.66 0.937278
Target:  5'- uGCGGCuguUGCGGGGGGaucauaUGGGUCg--- -3'
miRNA:   3'- -CGCCGc--AUGCUCCUCg-----ACCUAGaugg -5'
2965 5' -54.5 NC_001493.1 + 54189 0.66 0.930738
Target:  5'- -aGGUGaaGCGAGGGGCcgcgaaccUGGAgcacaugggucugaUCUACCa -3'
miRNA:   3'- cgCCGCa-UGCUCCUCG--------ACCU--------------AGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 54341 0.67 0.909268
Target:  5'- aUGGCGUACGAucugagauguucgGGuuGCUGGAggcuccucUCUAUCc -3'
miRNA:   3'- cGCCGCAUGCU-------------CCu-CGACCU--------AGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 25765 0.67 0.903673
Target:  5'- -aGGUGUGCGAuaaaGGGUUGaacucGGUCUACCg -3'
miRNA:   3'- cgCCGCAUGCUc---CUCGAC-----CUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 119014 0.67 0.89723
Target:  5'- cUGGCGUccCGAGGAGCgccccacGGAUCcuccCCa -3'
miRNA:   3'- cGCCGCAu-GCUCCUCGa------CCUAGau--GG- -5'
2965 5' -54.5 NC_001493.1 + 3460 0.67 0.89723
Target:  5'- cUGGCGUccCGAGGAGCgccccacGGAUCcuccCCa -3'
miRNA:   3'- cGCCGCAu-GCUCCUCGa------CCUAGau--GG- -5'
2965 5' -54.5 NC_001493.1 + 81239 0.71 0.746672
Target:  5'- -aGGCGauCGAGGAGgucgUGGGUCUGCUc -3'
miRNA:   3'- cgCCGCauGCUCCUCg---ACCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 30770 0.73 0.645533
Target:  5'- cGCGGUGUacggcACGAGGGGCguugccgGGAgc-GCCa -3'
miRNA:   3'- -CGCCGCA-----UGCUCCUCGa------CCUagaUGG- -5'
2965 5' -54.5 NC_001493.1 + 124826 0.81 0.260492
Target:  5'- -aGGCGgGCGuGGGGCUGGA-CUACCu -3'
miRNA:   3'- cgCCGCaUGCuCCUCGACCUaGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87823 0.84 0.162281
Target:  5'- cGCGGCGUACGAGGAGCcGGcUCcACg -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCuAGaUGg -5'
2965 5' -54.5 NC_001493.1 + 87931 0.98 0.019651
Target:  5'- cGgGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87973 0.98 0.019651
Target:  5'- cGgGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CgCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 87877 1.05 0.007003
Target:  5'- cGCGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 88057 1.05 0.007003
Target:  5'- cGCGGCGUACGAGGAGCcGGAUCUACCc -3'
miRNA:   3'- -CGCCGCAUGCUCCUCGaCCUAGAUGG- -5'
2965 5' -54.5 NC_001493.1 + 23298 0.66 0.950817
Target:  5'- cCGGUGUuaucguUGGGGAGCUGGAg----- -3'
miRNA:   3'- cGCCGCAu-----GCUCCUCGACCUagaugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.