miRNA display CGI


Results 41 - 60 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 126281 0.66 0.811701
Target:  5'- aGGCg-ACGUgGACGaGGCCaagcuggaccagGCCCGGg -3'
miRNA:   3'- -CCGgaUGCGgCUGUaCCGGa-----------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 133384 0.66 0.805698
Target:  5'- cGGCCgggGCGgCGGCcggGGCCgagcgggcggucuugGCCgCGGa -3'
miRNA:   3'- -CCGGa--UGCgGCUGua-CCGGa--------------UGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 121947 0.66 0.804834
Target:  5'- uGGCCgcCGCCGGCGacgacgccgaGGCCUACUuugagcgcaccaUGGg -3'
miRNA:   3'- -CCGGauGCGGCUGUa---------CCGGAUGG------------GCC- -5'
29650 5' -58.6 NC_006151.1 + 121434 0.66 0.804834
Target:  5'- gGGCUcGCGCCGGCcucGCUggUGCCCGcGg -3'
miRNA:   3'- -CCGGaUGCGGCUGuacCGG--AUGGGC-C- -5'
29650 5' -58.6 NC_006151.1 + 61025 0.66 0.804834
Target:  5'- aGGCuCUcgaucugcaccaGCaGCCGGCGguagGGCCgGCCCGu -3'
miRNA:   3'- -CCG-GA------------UG-CGGCUGUa---CCGGaUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 21428 0.66 0.804834
Target:  5'- gGGCCUcgggggucGCGgCGugGggUGGCC--CCCGGc -3'
miRNA:   3'- -CCGGA--------UGCgGCugU--ACCGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 3977 0.66 0.804834
Target:  5'- cGGCCUcggcgaGCCGGCcgcGGCCacguugGCCgGGg -3'
miRNA:   3'- -CCGGAug----CGGCUGua-CCGGa-----UGGgCC- -5'
29650 5' -58.6 NC_006151.1 + 2280 0.66 0.804834
Target:  5'- cGGCCggcgggGCGCCcgcGGCGgcgacGGC--GCCCGGg -3'
miRNA:   3'- -CCGGa-----UGCGG---CUGUa----CCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 2449 0.66 0.804834
Target:  5'- gGGCCgcagcgggGCGCCGAgccccCAgcgguUGGCCgcgcggUGCCCGa -3'
miRNA:   3'- -CCGGa-------UGCGGCU-----GU-----ACCGG------AUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 50708 0.66 0.804834
Target:  5'- cGCCU-CGgCGAC--GGCCgcCCCGGc -3'
miRNA:   3'- cCGGAuGCgGCUGuaCCGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 57512 0.66 0.804834
Target:  5'- cGGCC-GCGgCGGCGgcGGCCgccUCCGGc -3'
miRNA:   3'- -CCGGaUGCgGCUGUa-CCGGau-GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 125452 0.66 0.804834
Target:  5'- cGCCUgaaccccaGCGCCGugGccacGGCCgcGCUCGGc -3'
miRNA:   3'- cCGGA--------UGCGGCugUa---CCGGa-UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 135169 0.66 0.804834
Target:  5'- cGGCCcggacggGCGCCGGCu--GCCgcCgCCGGg -3'
miRNA:   3'- -CCGGa------UGCGGCUGuacCGGauG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 84247 0.66 0.804834
Target:  5'- uGGCCcagcggagcaUGCGCgugcuCGACGUGacgcGCCUGCCCu- -3'
miRNA:   3'- -CCGG----------AUGCG-----GCUGUAC----CGGAUGGGcc -5'
29650 5' -58.6 NC_006151.1 + 104777 0.66 0.802234
Target:  5'- cGGCgUACGCgGAgccaugcgcgcgcuCGUGcGCCgcgACCUGGc -3'
miRNA:   3'- -CCGgAUGCGgCU--------------GUAC-CGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 133696 0.66 0.796117
Target:  5'- cGGUCU-CGUCGGC--GGCg-ACCCGGg -3'
miRNA:   3'- -CCGGAuGCGGCUGuaCCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 128803 0.66 0.796117
Target:  5'- cGGCgaGCGCgGcgcGCGUGGCCccgUACgCGGc -3'
miRNA:   3'- -CCGgaUGCGgC---UGUACCGG---AUGgGCC- -5'
29650 5' -58.6 NC_006151.1 + 126207 0.66 0.796117
Target:  5'- cGCCUGCGCCGcaacccCAUgaaGGCCcugUACCCc- -3'
miRNA:   3'- cCGGAUGCGGCu-----GUA---CCGG---AUGGGcc -5'
29650 5' -58.6 NC_006151.1 + 124675 0.66 0.796117
Target:  5'- cGGCCUGCGCgagggggcccaCGgggagcACAUcGGCUacgcGCCCGGg -3'
miRNA:   3'- -CCGGAUGCG-----------GC------UGUA-CCGGa---UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 123072 0.66 0.796117
Target:  5'- cGCCgaGCGCCGGCGgcGCCUguACgCGGa -3'
miRNA:   3'- cCGGa-UGCGGCUGUacCGGA--UGgGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.