miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 68782 0.66 0.830064
Target:  5'- cGGCgaggUGCGCCGcCGcGGCCgucaucagGCCCGa -3'
miRNA:   3'- -CCGg---AUGCGGCuGUaCCGGa-------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 107439 0.66 0.830064
Target:  5'- cGCCaAC-CCGugGcUGGaCCUGCUCGGc -3'
miRNA:   3'- cCGGaUGcGGCugU-ACC-GGAUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 122964 0.66 0.825135
Target:  5'- gGGCgCggACGCCGGCGacgggGGCgUcggcgacgaagacggGCCCGGc -3'
miRNA:   3'- -CCG-Ga-UGCGGCUGUa----CCGgA---------------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 126029 0.66 0.821815
Target:  5'- gGGCCU-CGgCGACGUGGgCgccGCCguCGGc -3'
miRNA:   3'- -CCGGAuGCgGCUGUACCgGa--UGG--GCC- -5'
29650 5' -58.6 NC_006151.1 + 123023 0.66 0.821815
Target:  5'- cGGCggACGCCGugGCGUGGgcggaCCUGCCgGc -3'
miRNA:   3'- -CCGgaUGCGGC--UGUACC-----GGAUGGgCc -5'
29650 5' -58.6 NC_006151.1 + 106674 0.66 0.821815
Target:  5'- aGGCCgcgGCGCuCGGCGc-GCCggGCgCCGGc -3'
miRNA:   3'- -CCGGa--UGCG-GCUGUacCGGa-UG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 99141 0.66 0.821815
Target:  5'- gGGCgcAgGCCGugcACGUGGCCgccGCCgCGGa -3'
miRNA:   3'- -CCGgaUgCGGC---UGUACCGGa--UGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 54406 0.66 0.820981
Target:  5'- cGGCCUcggcgccgagGCGCUGGCGcGGCgCUucggcgacgaggcGCCCGc -3'
miRNA:   3'- -CCGGA----------UGCGGCUGUaCCG-GA-------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 119452 0.66 0.820145
Target:  5'- gGGCCgcggcgacguggACGCCGugcgcuACGUGGCCggcaGCCuCGa -3'
miRNA:   3'- -CCGGa-----------UGCGGC------UGUACCGGa---UGG-GCc -5'
29650 5' -58.6 NC_006151.1 + 70786 0.66 0.819308
Target:  5'- cGCCUccgGCaCCGGCGUGGCCgucgugggcagcuaCCGGc -3'
miRNA:   3'- cCGGA---UGcGGCUGUACCGGaug-----------GGCC- -5'
29650 5' -58.6 NC_006151.1 + 139632 0.66 0.816787
Target:  5'- gGGCCauccgGCGCCGGCGcgggGGUCgcggcgggcgcgccGCCCGa -3'
miRNA:   3'- -CCGGa----UGCGGCUGUa---CCGGa-------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 138088 0.66 0.816787
Target:  5'- aGGCCUucuucgcccggcgcACGCCGcuggcggacaugcuGCGcGGCCUGgCCGu -3'
miRNA:   3'- -CCGGA--------------UGCGGC--------------UGUaCCGGAUgGGCc -5'
29650 5' -58.6 NC_006151.1 + 3733 0.66 0.813403
Target:  5'- gGGUCcGgGCCGGCGgcgggggagcUGGCgUAgCCGGa -3'
miRNA:   3'- -CCGGaUgCGGCUGU----------ACCGgAUgGGCC- -5'
29650 5' -58.6 NC_006151.1 + 27593 0.66 0.813403
Target:  5'- aGGCUccccgACGCCGACccGGaaCCggACCCGa -3'
miRNA:   3'- -CCGGa----UGCGGCUGuaCC--GGa-UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 37229 0.66 0.813403
Target:  5'- cGGCCUccccgGCcCCGGCcccgGaGCCcGCCCGGc -3'
miRNA:   3'- -CCGGA-----UGcGGCUGua--C-CGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 50431 0.66 0.813403
Target:  5'- cGCCccugcGCGCCGGCGgccugGGCaCcGCCCGcGg -3'
miRNA:   3'- cCGGa----UGCGGCUGUa----CCG-GaUGGGC-C- -5'
29650 5' -58.6 NC_006151.1 + 69211 0.66 0.813403
Target:  5'- gGGCCcGCGCCGGCcgccccaggcgGUGGagUGCUCGu -3'
miRNA:   3'- -CCGGaUGCGGCUG-----------UACCggAUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 86790 0.66 0.813403
Target:  5'- gGGCUUcUGCCuaaaaGCggGGCCUcCCCGGc -3'
miRNA:   3'- -CCGGAuGCGGc----UGuaCCGGAuGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 66336 0.66 0.813403
Target:  5'- cGGCCUGgGCgacgCGACGcGGCgCUACUacgCGGa -3'
miRNA:   3'- -CCGGAUgCG----GCUGUaCCG-GAUGG---GCC- -5'
29650 5' -58.6 NC_006151.1 + 78758 0.66 0.813403
Target:  5'- cGUCUGCGCCGAgGcGGCgCU-CCUGa -3'
miRNA:   3'- cCGGAUGCGGCUgUaCCG-GAuGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.