miRNA display CGI


Results 21 - 40 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 102876 0.73 0.441921
Target:  5'- uGGCCaACGCCG-CGguggcgGGCCUGCgCCGc -3'
miRNA:   3'- -CCGGaUGCGGCuGUa-----CCGGAUG-GGCc -5'
29650 5' -58.6 NC_006151.1 + 6167 0.73 0.441921
Target:  5'- cGGCCU-CGgCGGCGUcgucggagaagaGGCC-GCCCGGg -3'
miRNA:   3'- -CCGGAuGCgGCUGUA------------CCGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 51530 0.73 0.450794
Target:  5'- aGGCCaccaGCGCCGuCAUGGUCggucucGCUCGGu -3'
miRNA:   3'- -CCGGa---UGCGGCuGUACCGGa-----UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 35226 0.73 0.450794
Target:  5'- uGGCCcggGCgaGCCGAgAUGGCC-GCCgCGGg -3'
miRNA:   3'- -CCGGa--UG--CGGCUgUACCGGaUGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 11036 0.72 0.459764
Target:  5'- gGGCCg--GCCGGCcgggGGCCcgGCCUGGa -3'
miRNA:   3'- -CCGGaugCGGCUGua--CCGGa-UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 40211 0.72 0.477983
Target:  5'- aGGCCgaggACGCCGGCAaccCCUACCUGc -3'
miRNA:   3'- -CCGGa---UGCGGCUGUaccGGAUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 125887 0.72 0.487225
Target:  5'- aGCU--CGCCGACAcgGGCCU-CCUGGa -3'
miRNA:   3'- cCGGauGCGGCUGUa-CCGGAuGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 104125 0.72 0.487225
Target:  5'- cGCCUGCG-CGACGUGGCggccgACCgCGGc -3'
miRNA:   3'- cCGGAUGCgGCUGUACCGga---UGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 87322 0.72 0.49655
Target:  5'- cGCCgu-GCCGGCGcucccgGGCCUGCCgGGc -3'
miRNA:   3'- cCGGaugCGGCUGUa-----CCGGAUGGgCC- -5'
29650 5' -58.6 NC_006151.1 + 138169 0.72 0.49655
Target:  5'- aGGCCUucgugGCgGACGUGGCCauggcGCCCGu -3'
miRNA:   3'- -CCGGAug---CGgCUGUACCGGa----UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 52466 0.72 0.49655
Target:  5'- cGGCCagGCGCCGGuaggccgcCGUgacGGCCUcgggcgccaGCCCGGg -3'
miRNA:   3'- -CCGGa-UGCGGCU--------GUA---CCGGA---------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 2064 0.72 0.49655
Target:  5'- cGGCCUccucguCGuCCGAgAUGGCCUccaccuugauggGCCCGa -3'
miRNA:   3'- -CCGGAu-----GC-GGCUgUACCGGA------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 101206 0.72 0.505955
Target:  5'- uGCCUGCGCgagggccaGGCGUGGaCgggGCCCGGc -3'
miRNA:   3'- cCGGAUGCGg-------CUGUACCgGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 54678 0.72 0.5069
Target:  5'- uGGCCgggcaccugcgcguCGCCGGCAgcgugcugGGCCaggGCCUGGa -3'
miRNA:   3'- -CCGGau------------GCGGCUGUa-------CCGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5892 0.71 0.512584
Target:  5'- cGGCCUcugccgcugcgaguGCuGCCGGgGUcggcGGCCgggGCCCGGa -3'
miRNA:   3'- -CCGGA--------------UG-CGGCUgUA----CCGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 102113 0.71 0.515436
Target:  5'- cGCgUGCGCgGGCcgGaGCCUGuucCCCGGg -3'
miRNA:   3'- cCGgAUGCGgCUGuaC-CGGAU---GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 114330 0.71 0.524987
Target:  5'- gGGCCUGCG-CGACGUGcGCgUGCUCu- -3'
miRNA:   3'- -CCGGAUGCgGCUGUAC-CGgAUGGGcc -5'
29650 5' -58.6 NC_006151.1 + 107854 0.71 0.524987
Target:  5'- cGGCCccgGCGcCCGAgAcGGCCccCCCGGa -3'
miRNA:   3'- -CCGGa--UGC-GGCUgUaCCGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 66558 0.71 0.544284
Target:  5'- cGGCC-GCGCCGcCGUGG---ACCCGGc -3'
miRNA:   3'- -CCGGaUGCGGCuGUACCggaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 91110 0.71 0.544284
Target:  5'- cGGCCgcgGCGCCcuucgccacggcGGCGagcuUGGCC-ACCUGGg -3'
miRNA:   3'- -CCGGa--UGCGG------------CUGU----ACCGGaUGGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.