miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 37838 1.12 0.001053
Target:  5'- gGGCCUACGCCGACAUGGCCUACCCGGg -3'
miRNA:   3'- -CCGGAUGCGGCUGUACCGGAUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 4123 0.8 0.174646
Target:  5'- cGGCCUGcCGCCGcucgGCcgGGCCggcCCCGGg -3'
miRNA:   3'- -CCGGAU-GCGGC----UGuaCCGGau-GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 137743 0.8 0.178988
Target:  5'- uGGCCgGCGCCGACAcGGuCCgcgGCCUGGc -3'
miRNA:   3'- -CCGGaUGCGGCUGUaCC-GGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 85697 0.79 0.183425
Target:  5'- uGGCCcacUACGUCGuCGUGGCCUACCgcgCGGa -3'
miRNA:   3'- -CCGG---AUGCGGCuGUACCGGAUGG---GCC- -5'
29650 5' -58.6 NC_006151.1 + 105679 0.78 0.227889
Target:  5'- cGGCCUACGgCGGCGcggGGCCgACgCCGGc -3'
miRNA:   3'- -CCGGAUGCgGCUGUa--CCGGaUG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 78687 0.77 0.252775
Target:  5'- gGGCuCUACGCCGGCcggGGCCUcgucgccgcgacggcGCCCGu -3'
miRNA:   3'- -CCG-GAUGCGGCUGua-CCGGA---------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 118192 0.76 0.292907
Target:  5'- aGGCCggcuuCGCCGggcACGUGGCCgugguggcgggcGCCCGGa -3'
miRNA:   3'- -CCGGau---GCGGC---UGUACCGGa-----------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5088 0.76 0.307118
Target:  5'- gGGCCgcggcggGCGCCGGCggagacgGUGGCg-GCCCGGc -3'
miRNA:   3'- -CCGGa------UGCGGCUG-------UACCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 109953 0.75 0.31477
Target:  5'- cGGCCUcgGCCG-CGucUGGCCcACCCGGg -3'
miRNA:   3'- -CCGGAugCGGCuGU--ACCGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 98434 0.75 0.343802
Target:  5'- cGGCCgugcuCGCCGAgAaccUGGCCgGCCUGGc -3'
miRNA:   3'- -CCGGau---GCGGCUgU---ACCGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 93595 0.75 0.351355
Target:  5'- gGGCUcGCGCCGA--UGGCCUGCagcagCCGGu -3'
miRNA:   3'- -CCGGaUGCGGCUguACCGGAUG-----GGCC- -5'
29650 5' -58.6 NC_006151.1 + 37969 0.74 0.359025
Target:  5'- uGGCggACGCCuGCGuccUGGCCUGCCgCGGc -3'
miRNA:   3'- -CCGgaUGCGGcUGU---ACCGGAUGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 38241 0.74 0.366811
Target:  5'- uGGaCCUACGCCGcggcccucuucGCcccggccaacGUGGCCgcgGCCCGGc -3'
miRNA:   3'- -CC-GGAUGCGGC-----------UG----------UACCGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 36570 0.74 0.366811
Target:  5'- uGGCCgcaGCGCCGGCAcGGCggggGCCCGc -3'
miRNA:   3'- -CCGGa--UGCGGCUGUaCCGga--UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 113114 0.74 0.374712
Target:  5'- gGGCCgcggACGCgGACGccGCCggGCCCGGc -3'
miRNA:   3'- -CCGGa---UGCGgCUGUacCGGa-UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 123918 0.73 0.40661
Target:  5'- cGGCCgugACGCgGGCcgccucGGCCUcgccgacGCCCGGg -3'
miRNA:   3'- -CCGGa--UGCGgCUGua----CCGGA-------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 125190 0.73 0.424476
Target:  5'- cGGCCU-CGCCGGCGUcgugGGCCccgcgGCCCc- -3'
miRNA:   3'- -CCGGAuGCGGCUGUA----CCGGa----UGGGcc -5'
29650 5' -58.6 NC_006151.1 + 61831 0.73 0.424476
Target:  5'- cGCg-GCGUCGACgGUGGCCgcCCCGGg -3'
miRNA:   3'- cCGgaUGCGGCUG-UACCGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 72256 0.73 0.424476
Target:  5'- cGGCCgccgACGCCGagcgGCGUGGCCaGCaugCGGu -3'
miRNA:   3'- -CCGGa---UGCGGC----UGUACCGGaUGg--GCC- -5'
29650 5' -58.6 NC_006151.1 + 40079 0.73 0.433148
Target:  5'- gGGCCUcggGCGCCGg---GGCCggcCCCGGc -3'
miRNA:   3'- -CCGGA---UGCGGCuguaCCGGau-GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.