miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 2064 0.72 0.49655
Target:  5'- cGGCCUccucguCGuCCGAgAUGGCCUccaccuugauggGCCCGa -3'
miRNA:   3'- -CCGGAu-----GC-GGCUgUACCGGA------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 2280 0.66 0.804834
Target:  5'- cGGCCggcgggGCGCCcgcGGCGgcgacGGC--GCCCGGg -3'
miRNA:   3'- -CCGGa-----UGCGG---CUGUa----CCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 2449 0.66 0.804834
Target:  5'- gGGCCgcagcgggGCGCCGAgccccCAgcgguUGGCCgcgcggUGCCCGa -3'
miRNA:   3'- -CCGGa-------UGCGGCU-----GU-----ACCGG------AUGGGCc -5'
29650 5' -58.6 NC_006151.1 + 2721 0.69 0.663115
Target:  5'- aGGCCUccACGCgGGCGaagcaGGCCggGCCCa- -3'
miRNA:   3'- -CCGGA--UGCGgCUGUa----CCGGa-UGGGcc -5'
29650 5' -58.6 NC_006151.1 + 2800 0.66 0.838142
Target:  5'- gGGCCaGCGCaCGGCGcacUGGgCgGCCgGGu -3'
miRNA:   3'- -CCGGaUGCG-GCUGU---ACCgGaUGGgCC- -5'
29650 5' -58.6 NC_006151.1 + 3580 0.69 0.653168
Target:  5'- cGCUUGCGCCGg---GGCC--CCCGGu -3'
miRNA:   3'- cCGGAUGCGGCuguaCCGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 3733 0.66 0.813403
Target:  5'- gGGUCcGgGCCGGCGgcgggggagcUGGCgUAgCCGGa -3'
miRNA:   3'- -CCGGaUgCGGCUGU----------ACCGgAUgGGCC- -5'
29650 5' -58.6 NC_006151.1 + 3885 0.68 0.710386
Target:  5'- cGCCgGCGCCGGCGcugggacgacgaGGCCgggcUGCUCGGg -3'
miRNA:   3'- cCGGaUGCGGCUGUa-----------CCGG----AUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 3940 0.69 0.633235
Target:  5'- aGGCCggGCGCgGGCuccGCggGCCCGGg -3'
miRNA:   3'- -CCGGa-UGCGgCUGuacCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 3977 0.66 0.804834
Target:  5'- cGGCCUcggcgaGCCGGCcgcGGCCacguugGCCgGGg -3'
miRNA:   3'- -CCGGAug----CGGCUGua-CCGGa-----UGGgCC- -5'
29650 5' -58.6 NC_006151.1 + 4123 0.8 0.174646
Target:  5'- cGGCCUGcCGCCGcucgGCcgGGCCggcCCCGGg -3'
miRNA:   3'- -CCGGAU-GCGGC----UGuaCCGGau-GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 4663 0.7 0.597385
Target:  5'- gGGCCUgcauccgcggguucuGCaGCCagGACAUGGCCU-CgCCGGc -3'
miRNA:   3'- -CCGGA---------------UG-CGG--CUGUACCGGAuG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 4792 0.7 0.613298
Target:  5'- cGGCCgcgGCGCgGuaGCG-GGCCgcgGCCUGGc -3'
miRNA:   3'- -CCGGa--UGCGgC--UGUaCCGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5088 0.76 0.307118
Target:  5'- gGGCCgcggcggGCGCCGGCggagacgGUGGCg-GCCCGGc -3'
miRNA:   3'- -CCGGa------UGCGGCUG-------UACCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5232 0.7 0.603346
Target:  5'- aGGCCgaGCGCCGcGCGgcggcGGCggggGCCCGGg -3'
miRNA:   3'- -CCGGa-UGCGGC-UGUa----CCGga--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5719 0.7 0.613298
Target:  5'- uGGCUgugcuggugGCGCCGGgGUccgaGGCCgcgccgccgGCCCGGg -3'
miRNA:   3'- -CCGGa--------UGCGGCUgUA----CCGGa--------UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 5892 0.71 0.512584
Target:  5'- cGGCCUcugccgcugcgaguGCuGCCGGgGUcggcGGCCgggGCCCGGa -3'
miRNA:   3'- -CCGGA--------------UG-CGGCUgUA----CCGGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 6167 0.73 0.441921
Target:  5'- cGGCCU-CGgCGGCGUcgucggagaagaGGCC-GCCCGGg -3'
miRNA:   3'- -CCGGAuGCgGCUGUA------------CCGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 7018 0.68 0.722013
Target:  5'- cGGCCcccGCGgCGGCcaucucGGCUcGCCCGGg -3'
miRNA:   3'- -CCGGa--UGCgGCUGua----CCGGaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 10557 0.69 0.673038
Target:  5'- cGCCcgGCGCCcaauGGCGcGGCCggcucggcgGCCCGGc -3'
miRNA:   3'- cCGGa-UGCGG----CUGUaCCGGa--------UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.