miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 5' -58.6 NC_006151.1 + 142148 0.68 0.682929
Target:  5'- uGCCUGCGCCGGCGcagggGGCUcgUCCa- -3'
miRNA:   3'- cCGGAUGCGGCUGUa----CCGGauGGGcc -5'
29650 5' -58.6 NC_006151.1 + 141967 0.67 0.769154
Target:  5'- cGGCuCUGCGggauCCGGUcgGGCg-GCCCGGg -3'
miRNA:   3'- -CCG-GAUGC----GGCUGuaCCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 139632 0.66 0.816787
Target:  5'- gGGCCauccgGCGCCGGCGcgggGGUCgcggcgggcgcgccGCCCGa -3'
miRNA:   3'- -CCGGa----UGCGGCUGUa---CCGGa-------------UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 138169 0.72 0.49655
Target:  5'- aGGCCUucgugGCgGACGUGGCCauggcGCCCGu -3'
miRNA:   3'- -CCGGAug---CGgCUGUACCGGa----UGGGCc -5'
29650 5' -58.6 NC_006151.1 + 138088 0.66 0.816787
Target:  5'- aGGCCUucuucgcccggcgcACGCCGcuggcggacaugcuGCGcGGCCUGgCCGu -3'
miRNA:   3'- -CCGGA--------------UGCGGC--------------UGUaCCGGAUgGGCc -5'
29650 5' -58.6 NC_006151.1 + 137743 0.8 0.178988
Target:  5'- uGGCCgGCGCCGACAcGGuCCgcgGCCUGGc -3'
miRNA:   3'- -CCGGaUGCGGCUGUaCC-GGa--UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 137496 0.68 0.712331
Target:  5'- cGCCgcccuCGCCGACuuUGGCgCcGCgCCGGg -3'
miRNA:   3'- cCGGau---GCGGCUGu-ACCG-GaUG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 137450 0.67 0.787259
Target:  5'- cGGCCUcCuCCGACGacGGCCUcgaggaggcGCCCuGGg -3'
miRNA:   3'- -CCGGAuGcGGCUGUa-CCGGA---------UGGG-CC- -5'
29650 5' -58.6 NC_006151.1 + 137093 0.68 0.731622
Target:  5'- aGGCCUuCGCgGuGC-UGGCCggggacGCCUGGg -3'
miRNA:   3'- -CCGGAuGCGgC-UGuACCGGa-----UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 137031 0.66 0.838142
Target:  5'- cGGCCUGC-CgGACGcGuGCCc-CCCGGc -3'
miRNA:   3'- -CCGGAUGcGgCUGUaC-CGGauGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 136956 0.67 0.759923
Target:  5'- cGuCCUGCGCCGccugcuggaGC-UGGCCgccGCgCCGGg -3'
miRNA:   3'- cC-GGAUGCGGC---------UGuACCGGa--UG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 136471 0.68 0.712331
Target:  5'- cGCCgaccGCGCCGAgAUGGgCguccUCCGGg -3'
miRNA:   3'- cCGGa---UGCGGCUgUACCgGau--GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 135418 0.67 0.749646
Target:  5'- aGGCCUcguggcGCGCCaGGCAcuccagguugcgcUGGCagGCCUGGu -3'
miRNA:   3'- -CCGGA------UGCGG-CUGU-------------ACCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 135368 0.67 0.769154
Target:  5'- cGCgUugGCCG-CGUGcGCCgcgACCaCGGc -3'
miRNA:   3'- cCGgAugCGGCuGUAC-CGGa--UGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 135169 0.66 0.804834
Target:  5'- cGGCCcggacggGCGCCGGCu--GCCgcCgCCGGg -3'
miRNA:   3'- -CCGGa------UGCGGCUGuacCGGauG-GGCC- -5'
29650 5' -58.6 NC_006151.1 + 134800 0.7 0.58351
Target:  5'- aGGCC-GCGgCGGCccGcGCCggACCCGGa -3'
miRNA:   3'- -CCGGaUGCgGCUGuaC-CGGa-UGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 133696 0.66 0.796117
Target:  5'- cGGUCU-CGUCGGC--GGCg-ACCCGGg -3'
miRNA:   3'- -CCGGAuGCGGCUGuaCCGgaUGGGCC- -5'
29650 5' -58.6 NC_006151.1 + 133384 0.66 0.805698
Target:  5'- cGGCCgggGCGgCGGCcggGGCCgagcgggcggucuugGCCgCGGa -3'
miRNA:   3'- -CCGGa--UGCgGCUGua-CCGGa--------------UGG-GCC- -5'
29650 5' -58.6 NC_006151.1 + 132578 0.67 0.741149
Target:  5'- cGGCCgggACuCgCGGCAUGGgCUccgcCCCGGg -3'
miRNA:   3'- -CCGGa--UGcG-GCUGUACCgGAu---GGGCC- -5'
29650 5' -58.6 NC_006151.1 + 131096 0.67 0.769154
Target:  5'- aGUCcACGUCGGCGgggGGCCcgGCCgCGGc -3'
miRNA:   3'- cCGGaUGCGGCUGUa--CCGGa-UGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.