miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29652 5' -52.6 NC_006152.1 + 3801 0.67 0.149203
Target:  5'- cGGcgaaCCCGggCACCACCGC-CACg -3'
miRNA:   3'- aCCuuaaGGGUagGUGGUGGUGuGUG- -5'
29652 5' -52.6 NC_006152.1 + 4018 0.67 0.134549
Target:  5'- uUGGAGguacacgUCCC-UCU-CCAuCCACACGCu -3'
miRNA:   3'- -ACCUUa------AGGGuAGGuGGU-GGUGUGUG- -5'
29652 5' -52.6 NC_006152.1 + 814 0.71 0.06632
Target:  5'- gGGAAUauaCCCAgaaUCCACCACCuuAUugGCu -3'
miRNA:   3'- aCCUUAa--GGGU---AGGUGGUGG--UGugUG- -5'
29652 5' -52.6 NC_006152.1 + 1647 1.11 2.8e-05
Target:  5'- gUGGAAUUCCCAUCCACCACCACACACa -3'
miRNA:   3'- -ACCUUAAGGGUAGGUGGUGGUGUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.