Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 36212 | 0.66 | 0.756748 |
Target: 5'- gUUGuACCG-GGGCGGccuGCgCGGGGGUGc -3' miRNA: 3'- -AGC-UGGCaCUUGCC---UGgGCCCCCAUu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 43474 | 0.66 | 0.756748 |
Target: 5'- gCGGCCGaucucguaGACGGACCCaGGGcGUGu -3' miRNA: 3'- aGCUGGCac------UUGCCUGGGcCCC-CAUu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 114503 | 0.66 | 0.792592 |
Target: 5'- -aGACgGUGAGCGGgucagcaACCCcacggacaGGGGGUu- -3' miRNA: 3'- agCUGgCACUUGCC-------UGGG--------CCCCCAuu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 107753 | 0.66 | 0.755805 |
Target: 5'- cCGACCGauccguaUGuuACGGGUgCGGGGGUGAc -3' miRNA: 3'- aGCUGGC-------ACu-UGCCUGgGCCCCCAUU- -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 42910 | 0.66 | 0.755805 |
Target: 5'- aUCGGuuGUGGcuucacgGCGGGCUCGGGuguuGGUGc -3' miRNA: 3'- -AGCUggCACU-------UGCCUGGGCCC----CCAUu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 91211 | 0.66 | 0.784492 |
Target: 5'- cUGACCGaaucccaGAagcaACGGucCCUGGGGGUGAc -3' miRNA: 3'- aGCUGGCa------CU----UGCCu-GGGCCCCCAUU- -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 112991 | 0.66 | 0.756748 |
Target: 5'- uUCG-CCGggaGGAUGGGCUCGGGGa--- -3' miRNA: 3'- -AGCuGGCa--CUUGCCUGGGCCCCcauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 44194 | 0.67 | 0.728043 |
Target: 5'- -gGGCCG-GGuauuuCGGGCCCuGGGGGa-- -3' miRNA: 3'- agCUGGCaCUu----GCCUGGG-CCCCCauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 83535 | 0.67 | 0.718302 |
Target: 5'- aUCGcACCG-GuAGCGGGCUCGGcGGGg-- -3' miRNA: 3'- -AGC-UGGCaC-UUGCCUGGGCC-CCCauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 109852 | 0.67 | 0.698615 |
Target: 5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3' miRNA: 3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 49767 | 0.67 | 0.737704 |
Target: 5'- cUCGGCCGUGcuGACGGugguguacaACCCcccugugcuGGGGGg-- -3' miRNA: 3'- -AGCUGGCAC--UUGCC---------UGGG---------CCCCCauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 26391 | 0.67 | 0.70849 |
Target: 5'- gUCGACCca-GACGGGCCCGGGu---- -3' miRNA: 3'- -AGCUGGcacUUGCCUGGGCCCccauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 58364 | 0.67 | 0.747275 |
Target: 5'- cCGACCGUGA---GACUCGGGGuGg-- -3' miRNA: 3'- aGCUGGCACUugcCUGGGCCCC-Cauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 12690 | 0.67 | 0.698615 |
Target: 5'- cCGACCccGGACGcGACCCGGGaGUc- -3' miRNA: 3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 128244 | 0.67 | 0.698615 |
Target: 5'- cCGACCccGGACGcGACCCGGGaGUc- -3' miRNA: 3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 32597 | 0.67 | 0.718302 |
Target: 5'- gCGACCG-GGACGGGCguuuacgguCCGGGGc--- -3' miRNA: 3'- aGCUGGCaCUUGCCUG---------GGCCCCcauu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 64248 | 0.67 | 0.718302 |
Target: 5'- gUUG-UCGUGAugagcuCGGucuccgGCCCGGGGGUGGg -3' miRNA: 3'- -AGCuGGCACUu-----GCC------UGGGCCCCCAUU- -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 123906 | 0.68 | 0.638525 |
Target: 5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3' miRNA: 3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 8352 | 0.68 | 0.638525 |
Target: 5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3' miRNA: 3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5' |
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2973 | 3' | -58.8 | NC_001493.1 | + | 20680 | 0.68 | 0.648599 |
Target: 5'- gCGGCCcaUGAuCGaGGCCCGGGGGc-- -3' miRNA: 3'- aGCUGGc-ACUuGC-CUGGGCCCCCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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