miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2973 3' -58.8 NC_001493.1 + 93843 1.06 0.002197
Target:  5'- aUCGACCGUGAACGGACCCGGGGGUAAa -3'
miRNA:   3'- -AGCUGGCACUUGCCUGGGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 35350 0.72 0.409759
Target:  5'- aUGACCGUGGACGucguCCCGGGGa--- -3'
miRNA:   3'- aGCUGGCACUUGCcu--GGGCCCCcauu -5'
2973 3' -58.8 NC_001493.1 + 107638 0.72 0.453723
Target:  5'- --uGCCGUGAGuuGAUCCGGGGGUu- -3'
miRNA:   3'- agcUGGCACUUgcCUGGGCCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 105870 0.7 0.519271
Target:  5'- aCGACCG-GGuacACGGAgacgagguCCCGGGGGg-- -3'
miRNA:   3'- aGCUGGCaCU---UGCCU--------GGGCCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 107210 0.7 0.528952
Target:  5'- gUCGACC-UGAggGCGGcCCCGGuucuGGGUAAa -3'
miRNA:   3'- -AGCUGGcACU--UGCCuGGGCC----CCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 50687 0.7 0.548507
Target:  5'- gCGGCCGUGggUGGACCUuucuuuuuuguGGuGGUGGu -3'
miRNA:   3'- aGCUGGCACuuGCCUGGG-----------CCcCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 20754 0.69 0.588232
Target:  5'- cUGACCGUGAcCGaACCCGGcGGGc-- -3'
miRNA:   3'- aGCUGGCACUuGCcUGGGCC-CCCauu -5'
2973 3' -58.8 NC_001493.1 + 123906 0.68 0.638525
Target:  5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3'
miRNA:   3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 8352 0.68 0.638525
Target:  5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3'
miRNA:   3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 20680 0.68 0.648599
Target:  5'- gCGGCCcaUGAuCGaGGCCCGGGGGc-- -3'
miRNA:   3'- aGCUGGc-ACUuGC-CUGGGCCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 36384 0.68 0.662679
Target:  5'- cUCGACCGcggucuuaggcucgGGGCGGGCCCucuugguucgaGGGGGc-- -3'
miRNA:   3'- -AGCUGGCa-------------CUUGCCUGGG-----------CCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 81304 0.68 0.688686
Target:  5'- aUCGACUGgguaagcuACGGGCCaGGGGGg-- -3'
miRNA:   3'- -AGCUGGCacu-----UGCCUGGgCCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 109852 0.67 0.698615
Target:  5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3'
miRNA:   3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5'
2973 3' -58.8 NC_001493.1 + 12690 0.67 0.698615
Target:  5'- cCGACCccGGACGcGACCCGGGaGUc- -3'
miRNA:   3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5'
2973 3' -58.8 NC_001493.1 + 128244 0.67 0.698615
Target:  5'- cCGACCccGGACGcGACCCGGGaGUc- -3'
miRNA:   3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5'
2973 3' -58.8 NC_001493.1 + 26391 0.67 0.70849
Target:  5'- gUCGACCca-GACGGGCCCGGGu---- -3'
miRNA:   3'- -AGCUGGcacUUGCCUGGGCCCccauu -5'
2973 3' -58.8 NC_001493.1 + 32597 0.67 0.718302
Target:  5'- gCGACCG-GGACGGGCguuuacgguCCGGGGc--- -3'
miRNA:   3'- aGCUGGCaCUUGCCUG---------GGCCCCcauu -5'
2973 3' -58.8 NC_001493.1 + 64248 0.67 0.718302
Target:  5'- gUUG-UCGUGAugagcuCGGucuccgGCCCGGGGGUGGg -3'
miRNA:   3'- -AGCuGGCACUu-----GCC------UGGGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 83535 0.67 0.718302
Target:  5'- aUCGcACCG-GuAGCGGGCUCGGcGGGg-- -3'
miRNA:   3'- -AGC-UGGCaC-UUGCCUGGGCC-CCCauu -5'
2973 3' -58.8 NC_001493.1 + 44194 0.67 0.728043
Target:  5'- -gGGCCG-GGuauuuCGGGCCCuGGGGGa-- -3'
miRNA:   3'- agCUGGCaCUu----GCCUGGG-CCCCCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.