miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2989 3' -52.6 NC_001493.1 + 59071 0.66 0.978719
Target:  5'- aUCACCGGUCGCGCgAaucuccacgaUGCAuuauuguuagcguucGAcCGAGu -3'
miRNA:   3'- -AGUGGCUAGCGCGgU----------AUGU---------------CUaGCUC- -5'
2989 3' -52.6 NC_001493.1 + 46014 0.66 0.977768
Target:  5'- cUCGCCGAggagaggcugUCGCGC---ACAGAacuucgcgugcUCGAGg -3'
miRNA:   3'- -AGUGGCU----------AGCGCGguaUGUCU-----------AGCUC- -5'
2989 3' -52.6 NC_001493.1 + 102481 0.66 0.977768
Target:  5'- uUCGCUGGUgGaaggugggGCCucgGCGGGUCGGGg -3'
miRNA:   3'- -AGUGGCUAgCg-------CGGua-UGUCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 113322 0.66 0.977768
Target:  5'- aCACgggGAUCGUGCCGggucUGCGcGUCGAGu -3'
miRNA:   3'- aGUGg--CUAGCGCGGU----AUGUcUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 106038 0.66 0.975255
Target:  5'- -aGCUGGUCGCGuUCGUGUGGGUCGGu -3'
miRNA:   3'- agUGGCUAGCGC-GGUAUGUCUAGCUc -5'
2989 3' -52.6 NC_001493.1 + 20993 0.66 0.975255
Target:  5'- gCGCCGcgcCGCGCCuccuCAGAuggguccugaUCGAGg -3'
miRNA:   3'- aGUGGCua-GCGCGGuau-GUCU----------AGCUC- -5'
2989 3' -52.6 NC_001493.1 + 47431 0.66 0.97254
Target:  5'- uUCACCGAuacacUCGCGUCG-AUGGGggGAGg -3'
miRNA:   3'- -AGUGGCU-----AGCGCGGUaUGUCUagCUC- -5'
2989 3' -52.6 NC_001493.1 + 42771 0.66 0.969617
Target:  5'- -aACCGAUCGCcaCCAggaaGC-GAUCGGGg -3'
miRNA:   3'- agUGGCUAGCGc-GGUa---UGuCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 82292 0.66 0.966478
Target:  5'- aCACCGGUCGCGagAUAaauCGGAUCu-- -3'
miRNA:   3'- aGUGGCUAGCGCggUAU---GUCUAGcuc -5'
2989 3' -52.6 NC_001493.1 + 132963 0.66 0.96516
Target:  5'- -gGCCGAUcaacucguccacgCGCGCCAgggUGCgggcacccccucugAGGUCGAGg -3'
miRNA:   3'- agUGGCUA-------------GCGCGGU---AUG--------------UCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 17409 0.66 0.96516
Target:  5'- -gGCCGAUcaacucguccacgCGCGCCAgggUGCgggcacccccucugAGGUCGAGg -3'
miRNA:   3'- agUGGCUA-------------GCGCGGU---AUG--------------UCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 71540 0.67 0.962064
Target:  5'- cCGCCguGAUCGCGaCCcggaugguaucagcGUAggcCAGAUCGAGg -3'
miRNA:   3'- aGUGG--CUAGCGC-GG--------------UAU---GUCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 123656 0.67 0.959527
Target:  5'- aCAUCGAUgGaCGCCAUGguGAU-GAGu -3'
miRNA:   3'- aGUGGCUAgC-GCGGUAUguCUAgCUC- -5'
2989 3' -52.6 NC_001493.1 + 8102 0.67 0.959527
Target:  5'- aCAUCGAUgGaCGCCAUGguGAU-GAGu -3'
miRNA:   3'- aGUGGCUAgC-GCGGUAUguCUAgCUC- -5'
2989 3' -52.6 NC_001493.1 + 44569 0.67 0.959527
Target:  5'- cCGCCGcggacAUCGCGCgg-GCGGA-CGAGg -3'
miRNA:   3'- aGUGGC-----UAGCGCGguaUGUCUaGCUC- -5'
2989 3' -52.6 NC_001493.1 + 56630 0.67 0.959527
Target:  5'- gCACCGAUC-CGCCcgagGCGGGcgCGAa -3'
miRNA:   3'- aGUGGCUAGcGCGGua--UGUCUa-GCUc -5'
2989 3' -52.6 NC_001493.1 + 56914 0.67 0.955705
Target:  5'- cCGCCGGUauaacaaaGCCAUccgccACGGGUCGGGg -3'
miRNA:   3'- aGUGGCUAgcg-----CGGUA-----UGUCUAGCUC- -5'
2989 3' -52.6 NC_001493.1 + 43622 0.67 0.955705
Target:  5'- cUACgaGAUCG-GCCGcGCAGAUCGAc -3'
miRNA:   3'- aGUGg-CUAGCgCGGUaUGUCUAGCUc -5'
2989 3' -52.6 NC_001493.1 + 30926 0.67 0.955705
Target:  5'- aCGCCccUCGUGCCGUACAccgCGGGu -3'
miRNA:   3'- aGUGGcuAGCGCGGUAUGUcuaGCUC- -5'
2989 3' -52.6 NC_001493.1 + 52686 0.67 0.951644
Target:  5'- aCGCgGGUUGaGCCAUGCGG-UCGAu -3'
miRNA:   3'- aGUGgCUAGCgCGGUAUGUCuAGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.