miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2989 5' -57.4 NC_001493.1 + 31068 0.66 0.86581
Target:  5'- cGGgaCGG-UCCACGcCGUGACCGGu- -3'
miRNA:   3'- -CCgaGUCaAGGUGCcGCGCUGGCUcu -5'
2989 5' -57.4 NC_001493.1 + 23084 0.66 0.837809
Target:  5'- cGUgaccaGGUUCCACGGgGUacgacccggcuucgaGACCGAGGc -3'
miRNA:   3'- cCGag---UCAAGGUGCCgCG---------------CUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 82122 0.66 0.834545
Target:  5'- ---aCAGUUUCAUGGCGCguuuGACCG-GAu -3'
miRNA:   3'- ccgaGUCAAGGUGCCGCG----CUGGCuCU- -5'
2989 5' -57.4 NC_001493.1 + 100033 0.66 0.834545
Target:  5'- aGCUCAGgaCCGCGGgacCGAaccCCGAGGg -3'
miRNA:   3'- cCGAGUCaaGGUGCCgc-GCU---GGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 103585 0.66 0.832903
Target:  5'- cGGCUgAGUg-CACGGCGUGuaguguucguaCGAGAg -3'
miRNA:   3'- -CCGAgUCAagGUGCCGCGCug---------GCUCU- -5'
2989 5' -57.4 NC_001493.1 + 114386 0.67 0.81695
Target:  5'- cGGCaaAGgugUCUAUGGCGgaaauguCGACCGGGGu -3'
miRNA:   3'- -CCGagUCa--AGGUGCCGC-------GCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 17652 0.67 0.800404
Target:  5'- aGGcCUCcgugccgauggGGUUCCAgaagaaGGUGCGAUCGGGGu -3'
miRNA:   3'- -CC-GAG-----------UCAAGGUg-----CCGCGCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 133206 0.67 0.800404
Target:  5'- aGGcCUCcgugccgauggGGUUCCAgaagaaGGUGCGAUCGGGGu -3'
miRNA:   3'- -CC-GAG-----------UCAAGGUg-----CCGCGCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 41781 0.67 0.791475
Target:  5'- aGGCggGGaUCgGuCGGUGUGACUGAGAg -3'
miRNA:   3'- -CCGagUCaAGgU-GCCGCGCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 44420 0.68 0.763882
Target:  5'- cGCgaug-UCCGCGGCgggguaguauGCGACCGGGGa -3'
miRNA:   3'- cCGagucaAGGUGCCG----------CGCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 133616 0.68 0.754443
Target:  5'- gGGCggUCGGgggCCugGGUGCcGCCGuGAa -3'
miRNA:   3'- -CCG--AGUCaa-GGugCCGCGcUGGCuCU- -5'
2989 5' -57.4 NC_001493.1 + 18061 0.68 0.754443
Target:  5'- gGGCggUCGGgggCCugGGUGCcGCCGuGAa -3'
miRNA:   3'- -CCG--AGUCaa-GGugCCGCGcUGGCuCU- -5'
2989 5' -57.4 NC_001493.1 + 28764 0.68 0.744898
Target:  5'- cGCUCA---CCGacaGGCacGCGACCGAGAu -3'
miRNA:   3'- cCGAGUcaaGGUg--CCG--CGCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 109013 0.68 0.735257
Target:  5'- cGGCUg---UCCAgGGCGUcguuguccauugGACCGAGAa -3'
miRNA:   3'- -CCGAgucaAGGUgCCGCG------------CUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 17763 0.69 0.685913
Target:  5'- gGGgUCGGggCCGCaacgcgGGCGUGcCCGGGAu -3'
miRNA:   3'- -CCgAGUCaaGGUG------CCGCGCuGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 133317 0.69 0.685913
Target:  5'- gGGgUCGGggCCGCaacgcgGGCGUGcCCGGGAu -3'
miRNA:   3'- -CCgAGUCaaGGUG------CCGCGCuGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 26117 0.7 0.65268
Target:  5'- gGGCUCGGaaagaCgaagaaucacugggACGGCGCGguGCCGAGAa -3'
miRNA:   3'- -CCGAGUCaag--G--------------UGCCGCGC--UGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 61459 0.7 0.635474
Target:  5'- gGGCUCGGggCUuauagcgcGCGGCuguuCGGCCGGGGu -3'
miRNA:   3'- -CCGAGUCaaGG--------UGCCGc---GCUGGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 10866 0.7 0.615224
Target:  5'- cGGCgaUCGGUgaCCGCGGCcgguucGCGAuCCGGGAc -3'
miRNA:   3'- -CCG--AGUCAa-GGUGCCG------CGCU-GGCUCU- -5'
2989 5' -57.4 NC_001493.1 + 126420 0.7 0.615224
Target:  5'- cGGCgaUCGGUgaCCGCGGCcgguucGCGAuCCGGGAc -3'
miRNA:   3'- -CCG--AGUCAa-GGUGCCG------CGCU-GGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.