Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2989 | 5' | -57.4 | NC_001493.1 | + | 103585 | 0.66 | 0.832903 |
|
Target: 5'- cGGCUgAGUg-CACGGCGUGuaguguucguaCGAGAg -3' miRNA: 3'- -CCGAgUCAagGUGCCGCGCug---------GCUCU- -5' |
|||||||
| 2989 | 5' | -57.4 | NC_001493.1 | + | 100033 | 0.66 | 0.834545 |
|
Target: 5'- aGCUCAGgaCCGCGGgacCGAaccCCGAGGg -3' miRNA: 3'- cCGAGUCaaGGUGCCgc-GCU---GGCUCU- -5' |
|||||||
| 2989 | 5' | -57.4 | NC_001493.1 | + | 82122 | 0.66 | 0.834545 |
|
Target: 5'- ---aCAGUUUCAUGGCGCguuuGACCG-GAu -3' miRNA: 3'- ccgaGUCAAGGUGCCGCG----CUGGCuCU- -5' |
|||||||
| 2989 | 5' | -57.4 | NC_001493.1 | + | 23084 | 0.66 | 0.837809 |
|
Target: 5'- cGUgaccaGGUUCCACGGgGUacgacccggcuucgaGACCGAGGc -3' miRNA: 3'- cCGag---UCAAGGUGCCgCG---------------CUGGCUCU- -5' |
|||||||
| 2989 | 5' | -57.4 | NC_001493.1 | + | 31068 | 0.66 | 0.86581 |
|
Target: 5'- cGGgaCGG-UCCACGcCGUGACCGGu- -3' miRNA: 3'- -CCgaGUCaAGGUGCcGCGCUGGCUcu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home