miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2991 3' -55.6 NC_001493.1 + 128910 0.66 0.92675
Target:  5'- gGCCCU--GUCGggUCUCcugaccuuGGGUCUGGu -3'
miRNA:   3'- -UGGGAggUAGCuuAGAG--------CCCAGGUCc -5'
2991 3' -55.6 NC_001493.1 + 13356 0.66 0.92675
Target:  5'- gGCCCU--GUCGggUCUCcugaccuuGGGUCUGGu -3'
miRNA:   3'- -UGGGAggUAGCuuAGAG--------CCCAGGUCc -5'
2991 3' -55.6 NC_001493.1 + 27431 0.66 0.897144
Target:  5'- uUCCUCag-CGGAcaUCUCGGGUCCc-- -3'
miRNA:   3'- uGGGAGguaGCUU--AGAGCCCAGGucc -5'
2991 3' -55.6 NC_001493.1 + 7858 0.66 0.896492
Target:  5'- uCCCUCac-CGAGUCucgacgaUCGGGUuccCCGGGg -3'
miRNA:   3'- uGGGAGguaGCUUAG-------AGCCCA---GGUCC- -5'
2991 3' -55.6 NC_001493.1 + 123412 0.66 0.896492
Target:  5'- uCCCUCac-CGAGUCucgacgaUCGGGUuccCCGGGg -3'
miRNA:   3'- uGGGAGguaGCUUAG-------AGCCCA---GGUCC- -5'
2991 3' -55.6 NC_001493.1 + 32087 0.67 0.876597
Target:  5'- aGCCuCUCCAUUGGAUCcaUGGucgCCGGGa -3'
miRNA:   3'- -UGG-GAGGUAGCUUAGa-GCCca-GGUCC- -5'
2991 3' -55.6 NC_001493.1 + 47635 0.67 0.854088
Target:  5'- gACCaucCCGUUGAaguugGUCUCGGuGUCCAcGGu -3'
miRNA:   3'- -UGGga-GGUAGCU-----UAGAGCC-CAGGU-CC- -5'
2991 3' -55.6 NC_001493.1 + 20258 0.68 0.846175
Target:  5'- aACCCUCgAgc-AAUCUCGGGUCguGcGg -3'
miRNA:   3'- -UGGGAGgUagcUUAGAGCCCAGguC-C- -5'
2991 3' -55.6 NC_001493.1 + 5147 0.68 0.838068
Target:  5'- cGCCCUCauCGUCGcuAUCccaagggaUCGGGUCguGGg -3'
miRNA:   3'- -UGGGAG--GUAGCu-UAG--------AGCCCAGguCC- -5'
2991 3' -55.6 NC_001493.1 + 120701 0.68 0.838068
Target:  5'- cGCCCUCauCGUCGcuAUCccaagggaUCGGGUCguGGg -3'
miRNA:   3'- -UGGGAG--GUAGCu-UAG--------AGCCCAGguCC- -5'
2991 3' -55.6 NC_001493.1 + 25872 0.68 0.82725
Target:  5'- uACCCgcCCGUCGAAucacagaaauaaauUCcuuuUCGGGcCCGGGa -3'
miRNA:   3'- -UGGGa-GGUAGCUU--------------AG----AGCCCaGGUCC- -5'
2991 3' -55.6 NC_001493.1 + 17983 0.69 0.794878
Target:  5'- -aCCUCCcacUCGAucaGUUUCGGGgccgcgUCCAGGa -3'
miRNA:   3'- ugGGAGGu--AGCU---UAGAGCCC------AGGUCC- -5'
2991 3' -55.6 NC_001493.1 + 133538 0.69 0.794878
Target:  5'- -aCCUCCcacUCGAucaGUUUCGGGgccgcgUCCAGGa -3'
miRNA:   3'- ugGGAGGu--AGCU---UAGAGCCC------AGGUCC- -5'
2991 3' -55.6 NC_001493.1 + 36533 0.7 0.728508
Target:  5'- gACUCUCCugcaCGGcguucGUCUUGGGUgCCAGGc -3'
miRNA:   3'- -UGGGAGGua--GCU-----UAGAGCCCA-GGUCC- -5'
2991 3' -55.6 NC_001493.1 + 4105 0.7 0.728508
Target:  5'- aGCUCUggaaaaaaaCCAUCGAGgaacucCUCGGGaCCGGGg -3'
miRNA:   3'- -UGGGA---------GGUAGCUUa-----GAGCCCaGGUCC- -5'
2991 3' -55.6 NC_001493.1 + 59117 0.7 0.728508
Target:  5'- cCUCUCCAUCaccAUCUaCGGGUCCAa- -3'
miRNA:   3'- uGGGAGGUAGcu-UAGA-GCCCAGGUcc -5'
2991 3' -55.6 NC_001493.1 + 119660 0.7 0.728508
Target:  5'- aGCUCUggaaaaaaaCCAUCGAGgaacucCUCGGGaCCGGGg -3'
miRNA:   3'- -UGGGA---------GGUAGCUUa-----GAGCCCaGGUCC- -5'
2991 3' -55.6 NC_001493.1 + 95402 0.7 0.708657
Target:  5'- cACCCgugaCCGcgacgCGAAuauuUCUCGGGUCCAuGGc -3'
miRNA:   3'- -UGGGa---GGUa----GCUU----AGAGCCCAGGU-CC- -5'
2991 3' -55.6 NC_001493.1 + 8040 0.71 0.69863
Target:  5'- cGCCCUCCuUCGucaccgCUCGgGGUgCGGGc -3'
miRNA:   3'- -UGGGAGGuAGCuua---GAGC-CCAgGUCC- -5'
2991 3' -55.6 NC_001493.1 + 123595 0.71 0.69863
Target:  5'- cGCCCUCCuUCGucaccgCUCGgGGUgCGGGc -3'
miRNA:   3'- -UGGGAGGuAGCuua---GAGC-CCAgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.