miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2992 5' -52.9 NC_001493.1 + 88052 0.65 0.973483
Target:  5'- aACCGG-GAacauac-CGCCGGUCUCGa -3'
miRNA:   3'- -UGGCCuCUgacuuaaGUGGCCAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 64408 0.66 0.971213
Target:  5'- gGCCGGAGACcGAGcUCAUcacgacaaCGGUggCUCGg -3'
miRNA:   3'- -UGGCCUCUGaCUUaAGUG--------GCCA--GAGU- -5'
2992 5' -52.9 NC_001493.1 + 126137 0.66 0.971213
Target:  5'- gACCGG-GGCUGugccCACaCGGUCUg- -3'
miRNA:   3'- -UGGCCuCUGACuuaaGUG-GCCAGAgu -5'
2992 5' -52.9 NC_001493.1 + 10582 0.66 0.971213
Target:  5'- gACCGG-GGCUGugccCACaCGGUCUg- -3'
miRNA:   3'- -UGGCCuCUGACuuaaGUG-GCCAGAgu -5'
2992 5' -52.9 NC_001493.1 + 58459 0.66 0.971213
Target:  5'- cCCGGAGACgcgGAAUgaacuCCGGcaCUCGa -3'
miRNA:   3'- uGGCCUCUGa--CUUAagu--GGCCa-GAGU- -5'
2992 5' -52.9 NC_001493.1 + 7829 0.66 0.96146
Target:  5'- cCCGGGGGgaGggUuaaucggggaggUCACCGGgagaCUCGa -3'
miRNA:   3'- uGGCCUCUgaCuuA------------AGUGGCCa---GAGU- -5'
2992 5' -52.9 NC_001493.1 + 123383 0.66 0.96146
Target:  5'- cCCGGGGGgaGggUuaaucggggaggUCACCGGgagaCUCGa -3'
miRNA:   3'- uGGCCUCUgaCuuA------------AGUGGCCa---GAGU- -5'
2992 5' -52.9 NC_001493.1 + 119228 0.67 0.954216
Target:  5'- -aCGGGGAUcccgaacggaaggggGAGUUCACCGccGUCUCGa -3'
miRNA:   3'- ugGCCUCUGa--------------CUUAAGUGGC--CAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 3674 0.67 0.954216
Target:  5'- -aCGGGGAUcccgaacggaaggggGAGUUCACCGccGUCUCGa -3'
miRNA:   3'- ugGCCUCUGa--------------CUUAAGUGGC--CAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 71402 0.68 0.919298
Target:  5'- aACUGGAGAUgg---UCGCCGGUCc-- -3'
miRNA:   3'- -UGGCCUCUGacuuaAGUGGCCAGagu -5'
2992 5' -52.9 NC_001493.1 + 85944 0.69 0.894057
Target:  5'- -aCGGAGACg-----CACCGGaUCUCAa -3'
miRNA:   3'- ugGCCUCUGacuuaaGUGGCC-AGAGU- -5'
2992 5' -52.9 NC_001493.1 + 121688 0.71 0.814811
Target:  5'- uCCGGAGAa-GAGUUCACCGGg---- -3'
miRNA:   3'- uGGCCUCUgaCUUAAGUGGCCagagu -5'
2992 5' -52.9 NC_001493.1 + 6134 0.71 0.814811
Target:  5'- uCCGGAGAa-GAGUUCACCGGg---- -3'
miRNA:   3'- uGGCCUCUgaCUUAAGUGGCCagagu -5'
2992 5' -52.9 NC_001493.1 + 8433 0.71 0.781584
Target:  5'- cGCCGGGGcucccacccaucgguGCUGGAg-CGCgGGUCUCAg -3'
miRNA:   3'- -UGGCCUC---------------UGACUUaaGUGgCCAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 123987 0.71 0.781584
Target:  5'- cGCCGGGGcucccacccaucgguGCUGGAg-CGCgGGUCUCAg -3'
miRNA:   3'- -UGGCCUC---------------UGACUUaaGUGgCCAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 41688 0.84 0.203618
Target:  5'- aACCGGAGACcGggUccUCACCuGGUCUCAc -3'
miRNA:   3'- -UGGCCUCUGaCuuA--AGUGG-CCAGAGU- -5'
2992 5' -52.9 NC_001493.1 + 109311 1.08 0.005509
Target:  5'- cACCGGAGACUGAAUUCACCGGUCUCAu -3'
miRNA:   3'- -UGGCCUCUGACUUAAGUGGCCAGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.