miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30284 5' -48.6 NC_006324.1 + 20076 0.66 0.910247
Target:  5'- -aAGU---GGACGCGAUGGAcgAGCCCa -3'
miRNA:   3'- gaUCAuagUCUGUGUUGUCU--UCGGGa -5'
30284 5' -48.6 NC_006324.1 + 7244 0.68 0.823831
Target:  5'- aCUGGa---GGACACAGCAGAauacgAGCUCa -3'
miRNA:   3'- -GAUCauagUCUGUGUUGUCU-----UCGGGa -5'
30284 5' -48.6 NC_006324.1 + 12631 0.7 0.689988
Target:  5'- aUAGUuUgGGGCuACAGCGGcAGCCCUg -3'
miRNA:   3'- gAUCAuAgUCUG-UGUUGUCuUCGGGA- -5'
30284 5' -48.6 NC_006324.1 + 1044 0.75 0.444529
Target:  5'- ---cUGUCAGGCGC--CAGAAGCCCUu -3'
miRNA:   3'- gaucAUAGUCUGUGuuGUCUUCGGGA- -5'
30284 5' -48.6 NC_006324.1 + 33560 0.75 0.444529
Target:  5'- ---cUGUCAGGCGC--CAGAAGCCCUu -3'
miRNA:   3'- gaucAUAGUCUGUGuuGUCUUCGGGA- -5'
30284 5' -48.6 NC_006324.1 + 12877 1.09 0.002293
Target:  5'- gCUAGUAUCAGACACAACAGAAGCCCUg -3'
miRNA:   3'- -GAUCAUAGUCUGUGUUGUCUUCGGGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.