Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 25574 | 1.14 | 0.001829 |
Target: 5'- gUGCACAAAUUGCACUUCGCCGAUUCCu -3' miRNA: 3'- -ACGUGUUUAACGUGAAGCGGCUAAGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 9348 | 0.68 | 0.910992 |
Target: 5'- aUGCGCAGAcgGCGCcgaagacaGCCGccUCCa -3' miRNA: 3'- -ACGUGUUUaaCGUGaag-----CGGCuaAGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 32384 | 0.67 | 0.930781 |
Target: 5'- aUGCGCcaagUGCACUaCGuuGGUUUUg -3' miRNA: 3'- -ACGUGuuuaACGUGAaGCggCUAAGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 33313 | 0.66 | 0.961401 |
Target: 5'- gGCugGAuaugauuugUGCGCUUCGCauuacguugaGAUUCa -3' miRNA: 3'- aCGugUUua-------ACGUGAAGCGg---------CUAAGg -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 21751 | 0.66 | 0.961401 |
Target: 5'- uUGCugGAuuucauucUGCGCggCGCCGAUa-- -3' miRNA: 3'- -ACGugUUua------ACGUGaaGCGGCUAagg -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 25948 | 0.66 | 0.965389 |
Target: 5'- aGCAUcug--GCGC-UCGCCGAUgcUCUc -3' miRNA: 3'- aCGUGuuuaaCGUGaAGCGGCUA--AGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 17523 | 0.68 | 0.888223 |
Target: 5'- cGUACA---UGCACaUCGCCGGgcaggaugCCu -3' miRNA: 3'- aCGUGUuuaACGUGaAGCGGCUaa------GG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 9484 | 0.7 | 0.824431 |
Target: 5'- uUGCGCAGgaacuuGUUGCagccucauuGCUUCGCUGAUaUCg -3' miRNA: 3'- -ACGUGUU------UAACG---------UGAAGCGGCUAaGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 16255 | 0.7 | 0.793181 |
Target: 5'- cGCGCGAAgacggGCGCUaggCGCCGcauauugcUUCCg -3' miRNA: 3'- aCGUGUUUaa---CGUGAa--GCGGCu-------AAGG- -5' |
|||||||
30288 | 5' | -47.1 | NC_006324.1 | + | 6177 | 0.72 | 0.701983 |
Target: 5'- gGCAUAAGUUcaGCACUuaagUUGUCGGUUUCa -3' miRNA: 3'- aCGUGUUUAA--CGUGA----AGCGGCUAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home