miRNA: 3'- -GUGUCGGACCCUGUGAGUUGUCGUGU- -5'
miRNA: 3'- -GUGUC-GGAC-CCUGUGAGu--UGUC-GUGU- -5'
miRNA: 3'- -GUgUCGGA-------CCCUGUGAgUUGUCgUGu -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30327 | 5' | -54.7 | NC_006383.2 | + | 9202 | 1.08 | 0.00018 |
|
Target: 5'- gCACAGCCUGGGACACUCAACAGCACAg -3' miRNA: 3'- -GUGUCGGACCCUGUGAGUUGUCGUGU- -5' |
|||||||
| 30327 | 5' | -54.7 | NC_006383.2 | + | 2648 | 0.7 | 0.192769 |
|
Target: 5'- uCGCAGaCUUGaGGACACUCcccACAGaCGCAu -3' miRNA: 3'- -GUGUC-GGAC-CCUGUGAGu--UGUC-GUGU- -5' |
|||||||
| 30327 | 5' | -54.7 | NC_006383.2 | + | 5451 | 0.68 | 0.272912 |
|
Target: 5'- cCGgGGCCUcuucgggGGGGCACUgGACGGgACu -3' miRNA: 3'- -GUgUCGGA-------CCCUGUGAgUUGUCgUGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home