miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3035 3' -60 NC_001493.1 + 131513 0.66 0.738411
Target:  5'- ---aCCCG-GAUUGGAGC-CCGGUg- -3'
miRNA:   3'- ucuaGGGCuCUGACCUCGgGGCCAga -5'
3035 3' -60 NC_001493.1 + 125973 0.66 0.699508
Target:  5'- gGGAUCa-GAccGugUGGgcacAGCCCCGGUCc -3'
miRNA:   3'- -UCUAGggCU--CugACC----UCGGGGCCAGa -5'
3035 3' -60 NC_001493.1 + 10419 0.66 0.699508
Target:  5'- gGGAUCa-GAccGugUGGgcacAGCCCCGGUCc -3'
miRNA:   3'- -UCUAGggCU--CugACC----UCGGGGCCAGa -5'
3035 3' -60 NC_001493.1 + 88577 0.67 0.679695
Target:  5'- aAGcAUCCCGAGGCauacccGGAGUacaCGGUCg -3'
miRNA:   3'- -UC-UAGGGCUCUGa-----CCUCGgg-GCCAGa -5'
3035 3' -60 NC_001493.1 + 14888 0.67 0.669728
Target:  5'- --cUCgUCGAGACgcgaGGGGCCCCGGa-- -3'
miRNA:   3'- ucuAG-GGCUCUGa---CCUCGGGGCCaga -5'
3035 3' -60 NC_001493.1 + 130442 0.67 0.669728
Target:  5'- --cUCgUCGAGACgcgaGGGGCCCCGGa-- -3'
miRNA:   3'- ucuAG-GGCUCUGa---CCUCGGGGCCaga -5'
3035 3' -60 NC_001493.1 + 78451 0.67 0.659732
Target:  5'- cGAcgCCCGugccAGuCUGGGGCCCgaGGUCg -3'
miRNA:   3'- uCUa-GGGC----UCuGACCUCGGGg-CCAGa -5'
3035 3' -60 NC_001493.1 + 97230 0.67 0.649714
Target:  5'- cAGAcCCCGAGG-UGGAGCCuguCCGGg-- -3'
miRNA:   3'- -UCUaGGGCUCUgACCUCGG---GGCCaga -5'
3035 3' -60 NC_001493.1 + 29661 0.67 0.639684
Target:  5'- aGGGUCCgCGAG-CUGGAGCaaCGGg-- -3'
miRNA:   3'- -UCUAGG-GCUCuGACCUCGggGCCaga -5'
3035 3' -60 NC_001493.1 + 16037 0.68 0.599577
Target:  5'- -cGUCCau-GACUGGAGCgaCCUGGUCa -3'
miRNA:   3'- ucUAGGgcuCUGACCUCG--GGGCCAGa -5'
3035 3' -60 NC_001493.1 + 131592 0.68 0.599577
Target:  5'- -cGUCCau-GACUGGAGCgaCCUGGUCa -3'
miRNA:   3'- ucUAGGgcuCUGACCUCG--GGGCCAGa -5'
3035 3' -60 NC_001493.1 + 42244 0.68 0.599577
Target:  5'- aAGGUCCgGAGACacagGGGGCacguCCCGGg-- -3'
miRNA:   3'- -UCUAGGgCUCUGa---CCUCG----GGGCCaga -5'
3035 3' -60 NC_001493.1 + 53941 0.68 0.58959
Target:  5'- gGGAUUCCugGAGACgGGugcgacGCCCCGGUg- -3'
miRNA:   3'- -UCUAGGG--CUCUGaCCu-----CGGGGCCAga -5'
3035 3' -60 NC_001493.1 + 50548 0.69 0.550005
Target:  5'- cGAgCCCGuguGGCUGG-GUCCCGGUa- -3'
miRNA:   3'- uCUaGGGCu--CUGACCuCGGGGCCAga -5'
3035 3' -60 NC_001493.1 + 30512 0.69 0.52086
Target:  5'- gGGAaaucUCUCGAcGaACUcGGGGCCCUGGUCg -3'
miRNA:   3'- -UCU----AGGGCU-C-UGA-CCUCGGGGCCAGa -5'
3035 3' -60 NC_001493.1 + 126838 0.69 0.511277
Target:  5'- uGGUCCCG-----GGAGCCCuCGGUCUg -3'
miRNA:   3'- uCUAGGGCucugaCCUCGGG-GCCAGA- -5'
3035 3' -60 NC_001493.1 + 11284 0.69 0.511277
Target:  5'- uGGUCCCG-----GGAGCCCuCGGUCUg -3'
miRNA:   3'- uCUAGGGCucugaCCUCGGG-GCCAGA- -5'
3035 3' -60 NC_001493.1 + 14802 0.71 0.410738
Target:  5'- uGGGUCCCaacgGGGGCuggcacgUGGAGCCCCgcguGGUCg -3'
miRNA:   3'- -UCUAGGG----CUCUG-------ACCUCGGGG----CCAGa -5'
3035 3' -60 NC_001493.1 + 130356 0.71 0.410738
Target:  5'- uGGGUCCCaacgGGGGCuggcacgUGGAGCCCCgcguGGUCg -3'
miRNA:   3'- -UCUAGGG----CUCUG-------ACCUCGGGG----CCAGa -5'
3035 3' -60 NC_001493.1 + 95122 0.74 0.270793
Target:  5'- uAGAUCCCcGGGC-GGAGCUCCGuGUCa -3'
miRNA:   3'- -UCUAGGGcUCUGaCCUCGGGGC-CAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.