miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3035 5' -59.3 NC_001493.1 + 13155 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 128710 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 112708 0.78 0.205852
Target:  5'- cCGAGAUCGaGGCGCUGGCAGGAcucGGCGu -3'
miRNA:   3'- -GCUCUGGCcUCGCGGCUGUCCU---CUGC- -5'
3035 5' -59.3 NC_001493.1 + 96241 0.74 0.327085
Target:  5'- uCGGGGCCGuAGCGCCcGCGGGAuGACu -3'
miRNA:   3'- -GCUCUGGCcUCGCGGcUGUCCU-CUGc -5'
3035 5' -59.3 NC_001493.1 + 20051 0.74 0.341757
Target:  5'- -cGGGCCGGcGCGacucCCGACGGGGGACu -3'
miRNA:   3'- gcUCUGGCCuCGC----GGCUGUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 5298 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3035 5' -59.3 NC_001493.1 + 120852 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3035 5' -59.3 NC_001493.1 + 8415 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 123969 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 21557 0.69 0.590403
Target:  5'- gGAGACC-GAGUGauGACGGGAGAa- -3'
miRNA:   3'- gCUCUGGcCUCGCggCUGUCCUCUgc -5'
3035 5' -59.3 NC_001493.1 + 56108 0.69 0.590403
Target:  5'- uGAGACCGGGGUGgucUCGGaAGGAcGACGc -3'
miRNA:   3'- gCUCUGGCCUCGC---GGCUgUCCU-CUGC- -5'
3035 5' -59.3 NC_001493.1 + 27944 0.69 0.600316
Target:  5'- gGAGA-UGGAGUguGCCGAgAGGAGgACGa -3'
miRNA:   3'- gCUCUgGCCUCG--CGGCUgUCCUC-UGC- -5'
3035 5' -59.3 NC_001493.1 + 51522 0.69 0.610251
Target:  5'- gGGGACCuGGAcCGCC-ACGGGAGGgGg -3'
miRNA:   3'- gCUCUGG-CCUcGCGGcUGUCCUCUgC- -5'
3035 5' -59.3 NC_001493.1 + 130825 0.69 0.620203
Target:  5'- cCGAGAcucccgaaCCGGGGCGCCaucACGGGGaACGu -3'
miRNA:   3'- -GCUCU--------GGCCUCGCGGc--UGUCCUcUGC- -5'
3035 5' -59.3 NC_001493.1 + 15271 0.69 0.620203
Target:  5'- cCGAGAcucccgaaCCGGGGCGCCaucACGGGGaACGu -3'
miRNA:   3'- -GCUCU--------GGCCUCGCGGc--UGUCCUcUGC- -5'
3035 5' -59.3 NC_001493.1 + 92987 0.68 0.66002
Target:  5'- gGGGuuCGGGGaCGCCGuCGGGugGGGCGa -3'
miRNA:   3'- gCUCugGCCUC-GCGGCuGUCC--UCUGC- -5'
3035 5' -59.3 NC_001493.1 + 123769 0.68 0.66002
Target:  5'- gCGAGACCGagcccgcaccccGAGCGgUGACgaAGGAgGGCGg -3'
miRNA:   3'- -GCUCUGGC------------CUCGCgGCUG--UCCU-CUGC- -5'
3035 5' -59.3 NC_001493.1 + 111499 0.68 0.66002
Target:  5'- -cGGACCGGugAGCGCCaucGACGaGAGAUGg -3'
miRNA:   3'- gcUCUGGCC--UCGCGG---CUGUcCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 8215 0.68 0.66002
Target:  5'- gCGAGACCGagcccgcaccccGAGCGgUGACgaAGGAgGGCGg -3'
miRNA:   3'- -GCUCUGGC------------CUCGCgGCUG--UCCU-CUGC- -5'
3035 5' -59.3 NC_001493.1 + 21942 0.67 0.718943
Target:  5'- aGGG-UCaGGGCGCUGGCGcGGAGACu -3'
miRNA:   3'- gCUCuGGcCUCGCGGCUGU-CCUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.