miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3035 5' -59.3 NC_001493.1 + 13155 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 119127 0.66 0.796758
Target:  5'- gCGAGAacaCGGAGCgagucaucgcuacacGCCGAUGGGgaaaAGACc -3'
miRNA:   3'- -GCUCUg--GCCUCG---------------CGGCUGUCC----UCUGc -5'
3035 5' -59.3 NC_001493.1 + 3573 0.66 0.796758
Target:  5'- gCGAGAacaCGGAGCgagucaucgcuacacGCCGAUGGGgaaaAGACc -3'
miRNA:   3'- -GCUCUg--GCCUCG---------------CGGCUGUCC----UCUGc -5'
3035 5' -59.3 NC_001493.1 + 114137 0.66 0.793239
Target:  5'- aCGGGACCaucugggaGGAcGCGCCaaucGCGGG-GACGu -3'
miRNA:   3'- -GCUCUGG--------CCU-CGCGGc---UGUCCuCUGC- -5'
3035 5' -59.3 NC_001493.1 + 33111 0.66 0.766182
Target:  5'- gCGAGcgaACCuGAuCGCCGagGCGGGAGAUGa -3'
miRNA:   3'- -GCUC---UGGcCUcGCGGC--UGUCCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 87983 0.66 0.756926
Target:  5'- uCGAGACuCGGAGuCGaCCGAggucuggAGGAGAUc -3'
miRNA:   3'- -GCUCUG-GCCUC-GC-GGCUg------UCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 118967 0.66 0.747566
Target:  5'- aGAGAgCGaGAGC-CC-ACGGGAGGCu -3'
miRNA:   3'- gCUCUgGC-CUCGcGGcUGUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 3413 0.66 0.747566
Target:  5'- aGAGAgCGaGAGC-CC-ACGGGAGGCu -3'
miRNA:   3'- gCUCUgGC-CUCGcGGcUGUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 95645 0.67 0.728565
Target:  5'- gGAcACCGGAGCGgUuACAGGAGGa- -3'
miRNA:   3'- gCUcUGGCCUCGCgGcUGUCCUCUgc -5'
3035 5' -59.3 NC_001493.1 + 56108 0.69 0.590403
Target:  5'- uGAGACCGGGGUGgucUCGGaAGGAcGACGc -3'
miRNA:   3'- gCUCUGGCCUCGC---GGCUgUCCU-CUGC- -5'
3035 5' -59.3 NC_001493.1 + 128710 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5'
3035 5' -59.3 NC_001493.1 + 27944 0.69 0.600316
Target:  5'- gGAGA-UGGAGUguGCCGAgAGGAGgACGa -3'
miRNA:   3'- gCUCUgGCCUCG--CGGCUgUCCUC-UGC- -5'
3035 5' -59.3 NC_001493.1 + 21557 0.69 0.590403
Target:  5'- gGAGACC-GAGUGauGACGGGAGAa- -3'
miRNA:   3'- gCUCUGGcCUCGCggCUGUCCUCUgc -5'
3035 5' -59.3 NC_001493.1 + 8415 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 123969 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 5298 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3035 5' -59.3 NC_001493.1 + 120852 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3035 5' -59.3 NC_001493.1 + 20051 0.74 0.341757
Target:  5'- -cGGGCCGGcGCGacucCCGACGGGGGACu -3'
miRNA:   3'- gcUCUGGCCuCGC----GGCUGUCCUCUGc -5'
3035 5' -59.3 NC_001493.1 + 96241 0.74 0.327085
Target:  5'- uCGGGGCCGuAGCGCCcGCGGGAuGACu -3'
miRNA:   3'- -GCUCUGGCcUCGCGGcUGUCCU-CUGc -5'
3035 5' -59.3 NC_001493.1 + 3364 0.66 0.793239
Target:  5'- -uGGACCaGAGCGCCGGgGuGGugaucGACGa -3'
miRNA:   3'- gcUCUGGcCUCGCGGCUgU-CCu----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.