miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 25340 0.66 0.765006
Target:  5'- --gGUgGGCGGCAAgGaCGCCGAUGa -3'
miRNA:   3'- ccgCAgCUGCUGUUgUaGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 27002 0.67 0.656721
Target:  5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3'
miRNA:   3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5'
30406 3' -53.9 NC_006548.1 + 27073 0.72 0.41264
Target:  5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3'
miRNA:   3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27216 0.69 0.578791
Target:  5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3'
miRNA:   3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 27633 0.69 0.589862
Target:  5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3'
miRNA:   3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 27996 0.67 0.666732
Target:  5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3'
miRNA:   3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5'
30406 3' -53.9 NC_006548.1 + 28290 0.66 0.754613
Target:  5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3'
miRNA:   3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 29410 0.67 0.678931
Target:  5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3'
miRNA:   3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 29479 0.66 0.754613
Target:  5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3'
miRNA:   3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 30361 0.74 0.286497
Target:  5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3'
miRNA:   3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5'
30406 3' -53.9 NC_006548.1 + 30659 0.69 0.567766
Target:  5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3'
miRNA:   3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 30974 0.68 0.634417
Target:  5'- gGGCGacuUCGACGGCGcuuucuACGU-GCCaACGCu -3'
miRNA:   3'- -CCGC---AGCUGCUGU------UGUAgCGGcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 31016 0.68 0.612104
Target:  5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5'
30406 3' -53.9 NC_006548.1 + 31504 0.68 0.612104
Target:  5'- cGCGaucUCGACGuGCAgguGCAgauaggcCGCCGugGCa -3'
miRNA:   3'- cCGC---AGCUGC-UGU---UGUa------GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 32471 0.69 0.535045
Target:  5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3'
miRNA:   3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5'
30406 3' -53.9 NC_006548.1 + 32723 0.67 0.700958
Target:  5'- gGGUGacaGGCG-CAGCgAUCGCCGuuGCu -3'
miRNA:   3'- -CCGCag-CUGCuGUUG-UAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 32943 0.72 0.393947
Target:  5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3'
miRNA:   3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 33021 0.67 0.689973
Target:  5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3'
miRNA:   3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 33603 0.75 0.251777
Target:  5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3'
miRNA:   3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35194 0.67 0.667843
Target:  5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3'
miRNA:   3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.