miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 20063 0.68 0.634417
Target:  5'- aGGUG-CG-CGACGGCAUgcucuaUGCCGAgcCGCa -3'
miRNA:   3'- -CCGCaGCuGCUGUUGUA------GCGGCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 20511 0.82 0.098226
Target:  5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3'
miRNA:   3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 20561 0.73 0.35825
Target:  5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3'
miRNA:   3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20897 0.68 0.631068
Target:  5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3'
miRNA:   3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21207 0.74 0.32488
Target:  5'- cGGCGggCGGCGAUGGCGcCGCUGGCa- -3'
miRNA:   3'- -CCGCa-GCUGCUGUUGUaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 21304 0.68 0.608761
Target:  5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3'
miRNA:   3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 21306 0.66 0.711874
Target:  5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3'
miRNA:   3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 21434 0.68 0.623256
Target:  5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3'
miRNA:   3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5'
30406 3' -53.9 NC_006548.1 + 21502 0.66 0.765006
Target:  5'- gGGCGauguaGACGGaccCGAUAUCaccCCGACGCc -3'
miRNA:   3'- -CCGCag---CUGCU---GUUGUAGc--GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22068 0.78 0.163483
Target:  5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3'
miRNA:   3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 22146 0.66 0.754613
Target:  5'- cGGCGaagCG-CGGCugAACAUCGCuCGGCcgggGCa -3'
miRNA:   3'- -CCGCa--GCuGCUG--UUGUAGCG-GCUG----CG- -5'
30406 3' -53.9 NC_006548.1 + 22214 0.66 0.754613
Target:  5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3'
miRNA:   3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22551 0.71 0.421228
Target:  5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3'
miRNA:   3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 23367 0.69 0.545885
Target:  5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3'
miRNA:   3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 24509 0.66 0.711874
Target:  5'- uGGCuGcCGAaGA--ACAUCGCUGugGCg -3'
miRNA:   3'- -CCG-CaGCUgCUguUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 24967 0.67 0.678931
Target:  5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3'
miRNA:   3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 25041 0.69 0.535045
Target:  5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3'
miRNA:   3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.