miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 21304 0.68 0.608761
Target:  5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3'
miRNA:   3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 31016 0.68 0.612104
Target:  5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 21306 0.66 0.711874
Target:  5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3'
miRNA:   3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 14651 0.66 0.710786
Target:  5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3'
miRNA:   3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32723 0.67 0.700958
Target:  5'- gGGUGacaGGCG-CAGCgAUCGCCGuuGCu -3'
miRNA:   3'- -CCGCag-CUGCuGUUG-UAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 33021 0.67 0.689973
Target:  5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3'
miRNA:   3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15839 0.67 0.678931
Target:  5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3'
miRNA:   3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5'
30406 3' -53.9 NC_006548.1 + 27996 0.67 0.666732
Target:  5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3'
miRNA:   3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5'
30406 3' -53.9 NC_006548.1 + 13428 0.67 0.655607
Target:  5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3'
miRNA:   3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5'
30406 3' -53.9 NC_006548.1 + 36828 0.68 0.650035
Target:  5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3'
miRNA:   3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 2098 0.68 0.645575
Target:  5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3'
miRNA:   3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 11747 0.68 0.634417
Target:  5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3'
miRNA:   3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 20897 0.68 0.631068
Target:  5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3'
miRNA:   3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 1148 0.66 0.744091
Target:  5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3'
miRNA:   3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 29479 0.66 0.754613
Target:  5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3'
miRNA:   3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 22214 0.66 0.754613
Target:  5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3'
miRNA:   3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20059 0.66 0.754613
Target:  5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3'
miRNA:   3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 8188 0.66 0.754613
Target:  5'- uGGCGcaguUCGGCGACGGCcUCccuuaCGACcGCa -3'
miRNA:   3'- -CCGC----AGCUGCUGUUGuAGcg---GCUG-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.