Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 21304 | 0.68 | 0.608761 |
Target: 5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3' miRNA: 3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 31016 | 0.68 | 0.612104 |
Target: 5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3' miRNA: 3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22080 | 0.71 | 0.451614 |
Target: 5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3' miRNA: 3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21306 | 0.66 | 0.711874 |
Target: 5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3' miRNA: 3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14651 | 0.66 | 0.710786 |
Target: 5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3' miRNA: 3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 32723 | 0.67 | 0.700958 |
Target: 5'- gGGUGacaGGCG-CAGCgAUCGCCGuuGCu -3' miRNA: 3'- -CCGCag-CUGCuGUUG-UAGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 33021 | 0.67 | 0.689973 |
Target: 5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3' miRNA: 3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15839 | 0.67 | 0.678931 |
Target: 5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3' miRNA: 3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27996 | 0.67 | 0.666732 |
Target: 5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3' miRNA: 3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13428 | 0.67 | 0.655607 |
Target: 5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3' miRNA: 3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36828 | 0.68 | 0.650035 |
Target: 5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3' miRNA: 3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2098 | 0.68 | 0.645575 |
Target: 5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3' miRNA: 3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20897 | 0.68 | 0.631068 |
Target: 5'- gGGUGUCGACGGgcagacucacCAGCAgcUCGaucaccggagccuuCUGGCGCg -3' miRNA: 3'- -CCGCAGCUGCU----------GUUGU--AGC--------------GGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17466 | 0.66 | 0.72271 |
Target: 5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3' miRNA: 3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 1148 | 0.66 | 0.744091 |
Target: 5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3' miRNA: 3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 29479 | 0.66 | 0.754613 |
Target: 5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3' miRNA: 3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22214 | 0.66 | 0.754613 |
Target: 5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3' miRNA: 3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20059 | 0.66 | 0.754613 |
Target: 5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3' miRNA: 3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 8188 | 0.66 | 0.754613 |
Target: 5'- uGGCGcaguUCGGCGACGGCcUCccuuaCGACcGCa -3' miRNA: 3'- -CCGC----AGCUGCUGUUGuAGcg---GCUG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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