miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 13280 0.66 0.744091
Target:  5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3'
miRNA:   3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2065 0.86 0.051658
Target:  5'- cGCGUCGGCGAUGuuGUCGUCGACGCc -3'
miRNA:   3'- cCGCAGCUGCUGUugUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 37669 0.66 0.755658
Target:  5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3'
miRNA:   3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5'
30406 3' -53.9 NC_006548.1 + 3435 0.66 0.754613
Target:  5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3'
miRNA:   3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 35900 0.66 0.754613
Target:  5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3'
miRNA:   3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 28290 0.66 0.754613
Target:  5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3'
miRNA:   3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22146 0.66 0.754613
Target:  5'- cGGCGaagCG-CGGCugAACAUCGCuCGGCcgggGCa -3'
miRNA:   3'- -CCGCa--GCuGCUG--UUGUAGCG-GCUG----CG- -5'
30406 3' -53.9 NC_006548.1 + 36855 0.66 0.748314
Target:  5'- uGGCGUaucCGACGAagaccuacggugugcUGACcguGUCGUgGGCGCa -3'
miRNA:   3'- -CCGCA---GCUGCU---------------GUUG---UAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17456 0.66 0.744091
Target:  5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3'
miRNA:   3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 14450 0.66 0.744091
Target:  5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3'
miRNA:   3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 20511 0.82 0.098226
Target:  5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3'
miRNA:   3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 2241 0.66 0.733452
Target:  5'- aGGCGUaGcCGGuCAGCuccggCGCCGcCGCg -3'
miRNA:   3'- -CCGCAgCuGCU-GUUGua---GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 8533 0.66 0.72271
Target:  5'- cGCGcagGACGcGCAGCGcgguuUCGuuGACGCg -3'
miRNA:   3'- cCGCag-CUGC-UGUUGU-----AGCggCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 24509 0.66 0.711874
Target:  5'- uGGCuGcCGAaGA--ACAUCGCUGugGCg -3'
miRNA:   3'- -CCG-CaGCUgCUguUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 29410 0.67 0.678931
Target:  5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3'
miRNA:   3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 17399 0.67 0.678931
Target:  5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3'
miRNA:   3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5'
30406 3' -53.9 NC_006548.1 + 24967 0.67 0.678931
Target:  5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3'
miRNA:   3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36623 0.67 0.667843
Target:  5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3'
miRNA:   3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 5310 0.67 0.667843
Target:  5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3'
miRNA:   3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.