Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 17466 | 0.66 | 0.72271 |
Target: 5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3' miRNA: 3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14651 | 0.66 | 0.710786 |
Target: 5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3' miRNA: 3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 25340 | 0.66 | 0.765006 |
Target: 5'- --gGUgGGCGGCAAgGaCGCCGAUGa -3' miRNA: 3'- ccgCAgCUGCUGUUgUaGCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21502 | 0.66 | 0.765006 |
Target: 5'- gGGCGauguaGACGGaccCGAUAUCaccCCGACGCc -3' miRNA: 3'- -CCGCag---CUGCU---GUUGUAGc--GGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15469 | 0.66 | 0.765006 |
Target: 5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3' miRNA: 3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35900 | 0.66 | 0.754613 |
Target: 5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3' miRNA: 3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21306 | 0.66 | 0.711874 |
Target: 5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3' miRNA: 3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15839 | 0.67 | 0.678931 |
Target: 5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3' miRNA: 3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 24967 | 0.67 | 0.678931 |
Target: 5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3' miRNA: 3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36623 | 0.67 | 0.667843 |
Target: 5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3' miRNA: 3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17399 | 0.67 | 0.678931 |
Target: 5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3' miRNA: 3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 29410 | 0.67 | 0.678931 |
Target: 5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3' miRNA: 3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27002 | 0.67 | 0.656721 |
Target: 5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3' miRNA: 3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35194 | 0.67 | 0.667843 |
Target: 5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3' miRNA: 3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13428 | 0.67 | 0.655607 |
Target: 5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3' miRNA: 3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27996 | 0.67 | 0.666732 |
Target: 5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3' miRNA: 3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 33021 | 0.67 | 0.689973 |
Target: 5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3' miRNA: 3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 32723 | 0.67 | 0.700958 |
Target: 5'- gGGUGacaGGCG-CAGCgAUCGCCGuuGCu -3' miRNA: 3'- -CCGCag-CUGCuGUUG-UAGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 5310 | 0.67 | 0.667843 |
Target: 5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3' miRNA: 3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21434 | 0.68 | 0.623256 |
Target: 5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3' miRNA: 3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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