miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 6981 0.71 0.441679
Target:  5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3'
miRNA:   3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36547 0.71 0.441679
Target:  5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3'
miRNA:   3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 15756 0.7 0.492518
Target:  5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3'
miRNA:   3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 11073 0.7 0.524281
Target:  5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3'
miRNA:   3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5'
30406 3' -53.9 NC_006548.1 + 32471 0.69 0.535045
Target:  5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3'
miRNA:   3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5'
30406 3' -53.9 NC_006548.1 + 25041 0.69 0.535045
Target:  5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3'
miRNA:   3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 23367 0.69 0.545885
Target:  5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3'
miRNA:   3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 2659 0.69 0.545885
Target:  5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3'
miRNA:   3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 7845 0.69 0.545885
Target:  5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3'
miRNA:   3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35878 0.69 0.566666
Target:  5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3'
miRNA:   3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 30659 0.69 0.567766
Target:  5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3'
miRNA:   3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27216 0.69 0.578791
Target:  5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3'
miRNA:   3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 5112 0.69 0.578791
Target:  5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3'
miRNA:   3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 27633 0.69 0.589862
Target:  5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3'
miRNA:   3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15115 0.68 0.600969
Target:  5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3'
miRNA:   3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.