miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 2130 1.15 0.000467
Target:  5'- gGGCGUCGACGACAACAUCGCCGACGCg -3'
miRNA:   3'- -CCGCAGCUGCUGUUGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2065 0.86 0.051658
Target:  5'- cGCGUCGGCGAUGuuGUCGUCGACGCc -3'
miRNA:   3'- cCGCAGCUGCUGUugUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20511 0.82 0.098226
Target:  5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3'
miRNA:   3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 14578 0.81 0.11337
Target:  5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3'
miRNA:   3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22068 0.78 0.163483
Target:  5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3'
miRNA:   3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 1068 0.76 0.224756
Target:  5'- -aUGUCGACGACccAgccggcgcagcucaGCAUCGCUGACGCc -3'
miRNA:   3'- ccGCAGCUGCUG--U--------------UGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 33603 0.75 0.251777
Target:  5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3'
miRNA:   3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 30361 0.74 0.286497
Target:  5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3'
miRNA:   3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5'
30406 3' -53.9 NC_006548.1 + 19751 0.74 0.309082
Target:  5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3'
miRNA:   3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21207 0.74 0.32488
Target:  5'- cGGCGggCGGCGAUGGCGcCGCUGGCa- -3'
miRNA:   3'- -CCGCa-GCUGCUGUUGUaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 18142 0.73 0.34127
Target:  5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3'
miRNA:   3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 35964 0.73 0.35825
Target:  5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3'
miRNA:   3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20561 0.73 0.35825
Target:  5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3'
miRNA:   3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36642 0.73 0.366959
Target:  5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3'
miRNA:   3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32943 0.72 0.393947
Target:  5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3'
miRNA:   3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4259 0.72 0.393947
Target:  5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3'
miRNA:   3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27073 0.72 0.41264
Target:  5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3'
miRNA:   3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22551 0.71 0.421228
Target:  5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3'
miRNA:   3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35712 0.71 0.422189
Target:  5'- cGUGaCGACuACGACGUCGC-GACGCu -3'
miRNA:   3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2950 0.71 0.422189
Target:  5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3'
miRNA:   3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.