miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 1068 0.76 0.224756
Target:  5'- -aUGUCGACGACccAgccggcgcagcucaGCAUCGCUGACGCc -3'
miRNA:   3'- ccGCAGCUGCUG--U--------------UGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 1148 0.66 0.744091
Target:  5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3'
miRNA:   3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 2065 0.86 0.051658
Target:  5'- cGCGUCGGCGAUGuuGUCGUCGACGCc -3'
miRNA:   3'- cCGCAGCUGCUGUugUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2098 0.68 0.645575
Target:  5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3'
miRNA:   3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2130 1.15 0.000467
Target:  5'- gGGCGUCGACGACAACAUCGCCGACGCg -3'
miRNA:   3'- -CCGCAGCUGCUGUUGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2241 0.66 0.733452
Target:  5'- aGGCGUaGcCGGuCAGCuccggCGCCGcCGCg -3'
miRNA:   3'- -CCGCAgCuGCU-GUUGua---GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 2659 0.69 0.545885
Target:  5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3'
miRNA:   3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 2950 0.71 0.422189
Target:  5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3'
miRNA:   3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5'
30406 3' -53.9 NC_006548.1 + 3435 0.66 0.754613
Target:  5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3'
miRNA:   3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 4124 0.66 0.765006
Target:  5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3'
miRNA:   3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 4259 0.72 0.393947
Target:  5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3'
miRNA:   3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4471 0.66 0.765006
Target:  5'- cGGUgcauGUCGGCGAaccgcuCGUCacuGCCGAUGUg -3'
miRNA:   3'- -CCG----CAGCUGCUguu---GUAG---CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 5112 0.69 0.578791
Target:  5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3'
miRNA:   3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5'
30406 3' -53.9 NC_006548.1 + 5310 0.67 0.667843
Target:  5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3'
miRNA:   3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 6981 0.71 0.441679
Target:  5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3'
miRNA:   3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 7845 0.69 0.545885
Target:  5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3'
miRNA:   3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 8188 0.66 0.754613
Target:  5'- uGGCGcaguUCGGCGACGGCcUCccuuaCGACcGCa -3'
miRNA:   3'- -CCGC----AGCUGCUGUUGuAGcg---GCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 8533 0.66 0.72271
Target:  5'- cGCGcagGACGcGCAGCGcgguuUCGuuGACGCg -3'
miRNA:   3'- cCGCag-CUGC-UGUUGU-----AGCggCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 9625 0.68 0.62214
Target:  5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3'
miRNA:   3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 11073 0.7 0.524281
Target:  5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3'
miRNA:   3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.