miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 37669 0.66 0.755658
Target:  5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3'
miRNA:   3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5'
30406 3' -53.9 NC_006548.1 + 36855 0.66 0.748314
Target:  5'- uGGCGUaucCGACGAagaccuacggugugcUGACcguGUCGUgGGCGCa -3'
miRNA:   3'- -CCGCA---GCUGCU---------------GUUG---UAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36828 0.68 0.650035
Target:  5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3'
miRNA:   3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 36642 0.73 0.366959
Target:  5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3'
miRNA:   3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36623 0.67 0.667843
Target:  5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3'
miRNA:   3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36547 0.71 0.441679
Target:  5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3'
miRNA:   3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35964 0.73 0.35825
Target:  5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3'
miRNA:   3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35900 0.66 0.754613
Target:  5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3'
miRNA:   3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 35878 0.69 0.566666
Target:  5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3'
miRNA:   3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 35712 0.71 0.422189
Target:  5'- cGUGaCGACuACGACGUCGC-GACGCu -3'
miRNA:   3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35194 0.67 0.667843
Target:  5'- aGGC--CGAgGGCGGCAUCGuuGGgcCGCu -3'
miRNA:   3'- -CCGcaGCUgCUGUUGUAGCggCU--GCG- -5'
30406 3' -53.9 NC_006548.1 + 33603 0.75 0.251777
Target:  5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3'
miRNA:   3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 33021 0.67 0.689973
Target:  5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3'
miRNA:   3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32943 0.72 0.393947
Target:  5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3'
miRNA:   3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32723 0.67 0.700958
Target:  5'- gGGUGacaGGCG-CAGCgAUCGCCGuuGCu -3'
miRNA:   3'- -CCGCag-CUGCuGUUG-UAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 32471 0.69 0.535045
Target:  5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3'
miRNA:   3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5'
30406 3' -53.9 NC_006548.1 + 31504 0.68 0.612104
Target:  5'- cGCGaucUCGACGuGCAgguGCAgauaggcCGCCGugGCa -3'
miRNA:   3'- cCGC---AGCUGC-UGU---UGUa------GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 31016 0.68 0.612104
Target:  5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5'
30406 3' -53.9 NC_006548.1 + 30974 0.68 0.634417
Target:  5'- gGGCGacuUCGACGGCGcuuucuACGU-GCCaACGCu -3'
miRNA:   3'- -CCGC---AGCUGCUGU------UGUAgCGGcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 30659 0.69 0.567766
Target:  5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3'
miRNA:   3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.