miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 30361 0.74 0.286497
Target:  5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3'
miRNA:   3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5'
30406 3' -53.9 NC_006548.1 + 29479 0.66 0.754613
Target:  5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3'
miRNA:   3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 29410 0.67 0.678931
Target:  5'- aGGCGgucagccgaUCGcUGGcCGACGUUGCCG-CGCa -3'
miRNA:   3'- -CCGC---------AGCuGCU-GUUGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 28290 0.66 0.754613
Target:  5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3'
miRNA:   3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27996 0.67 0.666732
Target:  5'- gGGCcUUGGCGGCAagcgagaACG-CGCCGggaACGCg -3'
miRNA:   3'- -CCGcAGCUGCUGU-------UGUaGCGGC---UGCG- -5'
30406 3' -53.9 NC_006548.1 + 27633 0.69 0.589862
Target:  5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3'
miRNA:   3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 27216 0.69 0.578791
Target:  5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3'
miRNA:   3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 27073 0.72 0.41264
Target:  5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3'
miRNA:   3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27002 0.67 0.656721
Target:  5'- aGCGUCGGCGA----GUcCGCCGAUcaGCa -3'
miRNA:   3'- cCGCAGCUGCUguugUA-GCGGCUG--CG- -5'
30406 3' -53.9 NC_006548.1 + 25340 0.66 0.765006
Target:  5'- --gGUgGGCGGCAAgGaCGCCGAUGa -3'
miRNA:   3'- ccgCAgCUGCUGUUgUaGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 25041 0.69 0.535045
Target:  5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3'
miRNA:   3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5'
30406 3' -53.9 NC_006548.1 + 24967 0.67 0.678931
Target:  5'- aGUGUgcUGuACGACAccuugaACGcCGCCGACGCc -3'
miRNA:   3'- cCGCA--GC-UGCUGU------UGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 24509 0.66 0.711874
Target:  5'- uGGCuGcCGAaGA--ACAUCGCUGugGCg -3'
miRNA:   3'- -CCG-CaGCUgCUguUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 23367 0.69 0.545885
Target:  5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3'
miRNA:   3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 22551 0.71 0.421228
Target:  5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3'
miRNA:   3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22214 0.66 0.754613
Target:  5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3'
miRNA:   3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22146 0.66 0.754613
Target:  5'- cGGCGaagCG-CGGCugAACAUCGCuCGGCcgggGCa -3'
miRNA:   3'- -CCGCa--GCuGCUG--UUGUAGCG-GCUG----CG- -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 22068 0.78 0.163483
Target:  5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3'
miRNA:   3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.