Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 12255 | 0.66 | 0.765006 |
Target: 5'- cGGCGcCGACaguccccacuCAGCAUgCGCCGcucgaaccagcACGCg -3' miRNA: 3'- -CCGCaGCUGcu--------GUUGUA-GCGGC-----------UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13280 | 0.66 | 0.744091 |
Target: 5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3' miRNA: 3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13428 | 0.67 | 0.655607 |
Target: 5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3' miRNA: 3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14450 | 0.66 | 0.744091 |
Target: 5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3' miRNA: 3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14578 | 0.81 | 0.11337 |
Target: 5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3' miRNA: 3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14651 | 0.66 | 0.710786 |
Target: 5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3' miRNA: 3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15115 | 0.68 | 0.600969 |
Target: 5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3' miRNA: 3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15469 | 0.66 | 0.765006 |
Target: 5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3' miRNA: 3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15756 | 0.7 | 0.492518 |
Target: 5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3' miRNA: 3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15839 | 0.67 | 0.678931 |
Target: 5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3' miRNA: 3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17399 | 0.67 | 0.678931 |
Target: 5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3' miRNA: 3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17456 | 0.66 | 0.744091 |
Target: 5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3' miRNA: 3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17466 | 0.66 | 0.72271 |
Target: 5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3' miRNA: 3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17552 | 0.68 | 0.600969 |
Target: 5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3' miRNA: 3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18142 | 0.73 | 0.34127 |
Target: 5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3' miRNA: 3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18568 | 0.69 | 0.535045 |
Target: 5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3' miRNA: 3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18611 | 0.69 | 0.566666 |
Target: 5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3' miRNA: 3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 19751 | 0.74 | 0.309082 |
Target: 5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3' miRNA: 3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20059 | 0.66 | 0.754613 |
Target: 5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3' miRNA: 3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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