miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 11747 0.68 0.634417
Target:  5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3'
miRNA:   3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 12255 0.66 0.765006
Target:  5'- cGGCGcCGACaguccccacuCAGCAUgCGCCGcucgaaccagcACGCg -3'
miRNA:   3'- -CCGCaGCUGcu--------GUUGUA-GCGGC-----------UGCG- -5'
30406 3' -53.9 NC_006548.1 + 13280 0.66 0.744091
Target:  5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3'
miRNA:   3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 13428 0.67 0.655607
Target:  5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3'
miRNA:   3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5'
30406 3' -53.9 NC_006548.1 + 14450 0.66 0.744091
Target:  5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3'
miRNA:   3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 14578 0.81 0.11337
Target:  5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3'
miRNA:   3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 14651 0.66 0.710786
Target:  5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3'
miRNA:   3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15115 0.68 0.600969
Target:  5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3'
miRNA:   3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5'
30406 3' -53.9 NC_006548.1 + 15469 0.66 0.765006
Target:  5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3'
miRNA:   3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5'
30406 3' -53.9 NC_006548.1 + 15756 0.7 0.492518
Target:  5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3'
miRNA:   3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 15839 0.67 0.678931
Target:  5'- uGGCGUCGAUG-CAGaugCGCUcacaGCGCu -3'
miRNA:   3'- -CCGCAGCUGCuGUUguaGCGGc---UGCG- -5'
30406 3' -53.9 NC_006548.1 + 17399 0.67 0.678931
Target:  5'- cGGCGcCGACGccuuccacCGAguUCGCCGAgGg -3'
miRNA:   3'- -CCGCaGCUGCu-------GUUguAGCGGCUgCg -5'
30406 3' -53.9 NC_006548.1 + 17456 0.66 0.744091
Target:  5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3'
miRNA:   3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18142 0.73 0.34127
Target:  5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3'
miRNA:   3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 19751 0.74 0.309082
Target:  5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3'
miRNA:   3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20059 0.66 0.754613
Target:  5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3'
miRNA:   3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.