miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 35900 0.66 0.754613
Target:  5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3'
miRNA:   3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 2241 0.66 0.733452
Target:  5'- aGGCGUaGcCGGuCAGCuccggCGCCGcCGCg -3'
miRNA:   3'- -CCGCAgCuGCU-GUUGua---GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 22146 0.66 0.754613
Target:  5'- cGGCGaagCG-CGGCugAACAUCGCuCGGCcgggGCa -3'
miRNA:   3'- -CCGCa--GCuGCUG--UUGUAGCG-GCUG----CG- -5'
30406 3' -53.9 NC_006548.1 + 28290 0.66 0.754613
Target:  5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3'
miRNA:   3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 13280 0.66 0.744091
Target:  5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3'
miRNA:   3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 14450 0.66 0.744091
Target:  5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3'
miRNA:   3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 17456 0.66 0.744091
Target:  5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3'
miRNA:   3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 36855 0.66 0.748314
Target:  5'- uGGCGUaucCGACGAagaccuacggugugcUGACcguGUCGUgGGCGCa -3'
miRNA:   3'- -CCGCA---GCUGCU---------------GUUG---UAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 3435 0.66 0.754613
Target:  5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3'
miRNA:   3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 8533 0.66 0.72271
Target:  5'- cGCGcagGACGcGCAGCGcgguuUCGuuGACGCg -3'
miRNA:   3'- cCGCag-CUGC-UGUUGU-----AGCggCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 24509 0.66 0.711874
Target:  5'- uGGCuGcCGAaGA--ACAUCGCUGugGCg -3'
miRNA:   3'- -CCG-CaGCUgCUguUGUAGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 23315 0.66 0.711874
Target:  5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3'
miRNA:   3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 14651 0.66 0.710786
Target:  5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3'
miRNA:   3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 1148 0.66 0.744091
Target:  5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3'
miRNA:   3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 4124 0.66 0.765006
Target:  5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3'
miRNA:   3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 20059 0.66 0.754613
Target:  5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3'
miRNA:   3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5'
30406 3' -53.9 NC_006548.1 + 21306 0.66 0.711874
Target:  5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3'
miRNA:   3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22214 0.66 0.754613
Target:  5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3'
miRNA:   3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 29479 0.66 0.754613
Target:  5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3'
miRNA:   3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.