Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 24509 | 0.66 | 0.711874 |
Target: 5'- uGGCuGcCGAaGA--ACAUCGCUGugGCg -3' miRNA: 3'- -CCG-CaGCUgCUguUGUAGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 37669 | 0.66 | 0.755658 |
Target: 5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3' miRNA: 3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 3435 | 0.66 | 0.754613 |
Target: 5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3' miRNA: 3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36855 | 0.66 | 0.748314 |
Target: 5'- uGGCGUaucCGACGAagaccuacggugugcUGACcguGUCGUgGGCGCa -3' miRNA: 3'- -CCGCA---GCUGCU---------------GUUG---UAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17456 | 0.66 | 0.744091 |
Target: 5'- cGGCGaUGGCGccGCAGC-UgGCCGAaGCg -3' miRNA: 3'- -CCGCaGCUGC--UGUUGuAgCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14450 | 0.66 | 0.744091 |
Target: 5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3' miRNA: 3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 13280 | 0.66 | 0.744091 |
Target: 5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3' miRNA: 3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 28290 | 0.66 | 0.754613 |
Target: 5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3' miRNA: 3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22146 | 0.66 | 0.754613 |
Target: 5'- cGGCGaagCG-CGGCugAACAUCGCuCGGCcgggGCa -3' miRNA: 3'- -CCGCa--GCuGCUG--UUGUAGCG-GCUG----CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2241 | 0.66 | 0.733452 |
Target: 5'- aGGCGUaGcCGGuCAGCuccggCGCCGcCGCg -3' miRNA: 3'- -CCGCAgCuGCU-GUUGua---GCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 8533 | 0.66 | 0.72271 |
Target: 5'- cGCGcagGACGcGCAGCGcgguuUCGuuGACGCg -3' miRNA: 3'- cCGCag-CUGC-UGUUGU-----AGCggCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35900 | 0.66 | 0.754613 |
Target: 5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3' miRNA: 3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 23315 | 0.66 | 0.711874 |
Target: 5'- aGGCuacaUCGACGGCuuccucCAgCGCCGGgGCu -3' miRNA: 3'- -CCGc---AGCUGCUGuu----GUaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 29479 | 0.66 | 0.754613 |
Target: 5'- cGGCaacGUCGGC--CAGCgAUCGCUGAcCGCc -3' miRNA: 3'- -CCG---CAGCUGcuGUUG-UAGCGGCU-GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22214 | 0.66 | 0.754613 |
Target: 5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3' miRNA: 3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21306 | 0.66 | 0.711874 |
Target: 5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3' miRNA: 3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20059 | 0.66 | 0.754613 |
Target: 5'- gGGUGgcCGAUGACgAGCGgggccUCGCUGAgCGCc -3' miRNA: 3'- -CCGCa-GCUGCUG-UUGU-----AGCGGCU-GCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 4124 | 0.66 | 0.765006 |
Target: 5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3' miRNA: 3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17466 | 0.66 | 0.72271 |
Target: 5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3' miRNA: 3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 1148 | 0.66 | 0.744091 |
Target: 5'- gGGCGUCaGCGAUgcugAGCugCGCCGGCu- -3' miRNA: 3'- -CCGCAGcUGCUG----UUGuaGCGGCUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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