miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 31016 0.68 0.612104
Target:  5'- gGGCGcCGAgGACGugAUUGUCGAa-- -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAGCGGCUgcg -5'
30406 3' -53.9 NC_006548.1 + 11073 0.7 0.524281
Target:  5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3'
miRNA:   3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5'
30406 3' -53.9 NC_006548.1 + 2659 0.69 0.545885
Target:  5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3'
miRNA:   3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 18611 0.69 0.566666
Target:  5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3'
miRNA:   3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 30659 0.69 0.567766
Target:  5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3'
miRNA:   3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 5112 0.69 0.578791
Target:  5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3'
miRNA:   3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5'
30406 3' -53.9 NC_006548.1 + 27216 0.69 0.578791
Target:  5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3'
miRNA:   3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 27633 0.69 0.589862
Target:  5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3'
miRNA:   3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 21304 0.68 0.608761
Target:  5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3'
miRNA:   3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 22080 0.71 0.451614
Target:  5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3'
miRNA:   3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 36547 0.71 0.441679
Target:  5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3'
miRNA:   3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 6981 0.71 0.441679
Target:  5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3'
miRNA:   3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 20511 0.82 0.098226
Target:  5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3'
miRNA:   3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 14578 0.81 0.11337
Target:  5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3'
miRNA:   3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 1068 0.76 0.224756
Target:  5'- -aUGUCGACGACccAgccggcgcagcucaGCAUCGCUGACGCc -3'
miRNA:   3'- ccGCAGCUGCUG--U--------------UGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35964 0.73 0.35825
Target:  5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3'
miRNA:   3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4259 0.72 0.393947
Target:  5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3'
miRNA:   3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32943 0.72 0.393947
Target:  5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3'
miRNA:   3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22551 0.71 0.421228
Target:  5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3'
miRNA:   3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35712 0.71 0.422189
Target:  5'- cGUGaCGACuACGACGUCGC-GACGCu -3'
miRNA:   3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.