Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 20511 | 0.82 | 0.098226 |
Target: 5'- aGGCGUCGACGccGCAGCAgccucUGCCGcCGCu -3' miRNA: 3'- -CCGCAGCUGC--UGUUGUa----GCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21304 | 0.68 | 0.608761 |
Target: 5'- cGGUcgaGUaCGGCGGCAACGUcacucgcggugaugCGCUGACGg -3' miRNA: 3'- -CCG---CA-GCUGCUGUUGUA--------------GCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27633 | 0.69 | 0.589862 |
Target: 5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3' miRNA: 3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27216 | 0.69 | 0.578791 |
Target: 5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3' miRNA: 3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 5112 | 0.69 | 0.578791 |
Target: 5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3' miRNA: 3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 30659 | 0.69 | 0.567766 |
Target: 5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3' miRNA: 3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18611 | 0.69 | 0.566666 |
Target: 5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3' miRNA: 3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2659 | 0.69 | 0.545885 |
Target: 5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3' miRNA: 3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11073 | 0.7 | 0.524281 |
Target: 5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3' miRNA: 3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22080 | 0.71 | 0.451614 |
Target: 5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3' miRNA: 3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36547 | 0.71 | 0.441679 |
Target: 5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3' miRNA: 3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 6981 | 0.71 | 0.441679 |
Target: 5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3' miRNA: 3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35712 | 0.71 | 0.422189 |
Target: 5'- cGUGaCGACuACGACGUCGC-GACGCu -3' miRNA: 3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22551 | 0.71 | 0.421228 |
Target: 5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3' miRNA: 3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 32943 | 0.72 | 0.393947 |
Target: 5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3' miRNA: 3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 4259 | 0.72 | 0.393947 |
Target: 5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3' miRNA: 3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35964 | 0.73 | 0.35825 |
Target: 5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3' miRNA: 3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 1068 | 0.76 | 0.224756 |
Target: 5'- -aUGUCGACGACccAgccggcgcagcucaGCAUCGCUGACGCc -3' miRNA: 3'- ccGCAGCUGCUG--U--------------UGUAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 14578 | 0.81 | 0.11337 |
Target: 5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3' miRNA: 3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2065 | 0.86 | 0.051658 |
Target: 5'- cGCGUCGGCGAUGuuGUCGUCGACGCc -3' miRNA: 3'- cCGCAGCUGCUGUugUAGCGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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