Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 23367 | 0.69 | 0.545885 |
Target: 5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3' miRNA: 3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2130 | 1.15 | 0.000467 |
Target: 5'- gGGCGUCGACGACAACAUCGCCGACGCg -3' miRNA: 3'- -CCGCAGCUGCUGUUGUAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22068 | 0.78 | 0.163483 |
Target: 5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3' miRNA: 3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27073 | 0.72 | 0.41264 |
Target: 5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3' miRNA: 3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2950 | 0.71 | 0.422189 |
Target: 5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3' miRNA: 3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 33603 | 0.75 | 0.251777 |
Target: 5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3' miRNA: 3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18142 | 0.73 | 0.34127 |
Target: 5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3' miRNA: 3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36642 | 0.73 | 0.366959 |
Target: 5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3' miRNA: 3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18568 | 0.69 | 0.535045 |
Target: 5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3' miRNA: 3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21395 | 0.69 | 0.586537 |
Target: 5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3' miRNA: 3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 4124 | 0.66 | 0.765006 |
Target: 5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3' miRNA: 3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 19751 | 0.74 | 0.309082 |
Target: 5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3' miRNA: 3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 30361 | 0.74 | 0.286497 |
Target: 5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3' miRNA: 3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 25041 | 0.69 | 0.535045 |
Target: 5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3' miRNA: 3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 32471 | 0.69 | 0.535045 |
Target: 5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3' miRNA: 3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21207 | 0.74 | 0.32488 |
Target: 5'- cGGCGggCGGCGAUGGCGcCGCUGGCa- -3' miRNA: 3'- -CCGCa-GCUGCUGUUGUaGCGGCUGcg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35878 | 0.69 | 0.566666 |
Target: 5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3' miRNA: 3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 17552 | 0.68 | 0.600969 |
Target: 5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3' miRNA: 3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 20561 | 0.73 | 0.35825 |
Target: 5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3' miRNA: 3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15756 | 0.7 | 0.492518 |
Target: 5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3' miRNA: 3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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