miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 2130 1.15 0.000467
Target:  5'- gGGCGUCGACGACAACAUCGCCGACGCg -3'
miRNA:   3'- -CCGCAGCUGCUGUUGUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35878 0.69 0.566666
Target:  5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3'
miRNA:   3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 4124 0.66 0.765006
Target:  5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3'
miRNA:   3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 19751 0.74 0.309082
Target:  5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3'
miRNA:   3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21207 0.74 0.32488
Target:  5'- cGGCGggCGGCGAUGGCGcCGCUGGCa- -3'
miRNA:   3'- -CCGCa-GCUGCUGUUGUaGCGGCUGcg -5'
30406 3' -53.9 NC_006548.1 + 20561 0.73 0.35825
Target:  5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3'
miRNA:   3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36642 0.73 0.366959
Target:  5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3'
miRNA:   3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15756 0.7 0.492518
Target:  5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3'
miRNA:   3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 7845 0.69 0.545885
Target:  5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3'
miRNA:   3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5'
30406 3' -53.9 NC_006548.1 + 32471 0.69 0.535045
Target:  5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3'
miRNA:   3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5'
30406 3' -53.9 NC_006548.1 + 2950 0.71 0.422189
Target:  5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3'
miRNA:   3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5'
30406 3' -53.9 NC_006548.1 + 22068 0.78 0.163483
Target:  5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3'
miRNA:   3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 33603 0.75 0.251777
Target:  5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3'
miRNA:   3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 27073 0.72 0.41264
Target:  5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3'
miRNA:   3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 23367 0.69 0.545885
Target:  5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3'
miRNA:   3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 30361 0.74 0.286497
Target:  5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3'
miRNA:   3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5'
30406 3' -53.9 NC_006548.1 + 18142 0.73 0.34127
Target:  5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3'
miRNA:   3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.